Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11n20
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    34   0.024
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    33   0.041
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    32   0.072
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    32   0.072
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    30   0.38 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.67 
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    28   1.2  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    28   1.2  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   1.6  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    27   2.1  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.7  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   3.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.6  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   4.7  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   6.3  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   6.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   8.3  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    25   8.3  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -1

Query: 504 NRSLESRVDLGL---EIRSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDTVEARVL 334
           N  + S+ DLG    E+ S   +L GLR D     N   E K+   +  G+   V+AR+ 
Sbjct: 316 NLLVHSKNDLGKQKGELVSLDSQLEGLRVDDPNSANQSFESKKASINLEGKELMVKARIE 375

Query: 333 GLEARLAEIVSTA 295
            LE R+ +I S A
Sbjct: 376 DLEVRINKITSVA 388


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
 Frame = -1

Query: 498  SLESRVDLGLEI-RSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDTVEARVLGLEA 322
            +L+ +++ G ++ +   +++  L  DL       +   + LK+     D++++ V   + 
Sbjct: 866  NLQEKINFGNKLAKEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLKS-VSNDDQ 924

Query: 321  RLAEIVSTAAGSDLDSTVAELRIQLRERDQDLLRNDIDIIGL 196
               + V+     ++   +AE   +L  RD+++ R  +DIIGL
Sbjct: 925  NKEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGL 966


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -1

Query: 705 RCSKCSDIFHKGCVSIPSTGAAPR--GWICPSCSAKVPRGDNT 583
           +C+ C   +H  CV  P     P   GW C +CS    R  +T
Sbjct: 276 QCADCKKYYHMDCVVPPLLKKPPHGFGWTCATCSFATQRKKST 318


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = -1

Query: 702 CSKCSDIFHKGCVSIPSTGAAPR------GWICPSCS 610
           C  CS+++H  C  +PS     R      G+ICP CS
Sbjct: 233 CDHCSNVYHYDCSPLPSLNKETRNYSQQNGFICPLCS 269


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 702 CSKCSDIFHKGCVSIP-STGAAPRGWICPSCS 610
           C  C D FH  CV+IP S       + CP C+
Sbjct: 135 CDGCEDWFHGTCVNIPESYNDLTVQYFCPKCT 166


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -1

Query: 420  RECRNDIAEFKELLKSCHGRIDTVEARVLGLEARLAEIVSTAAGSDLDSTVAELRIQLRE 241
            R+C++   EFK  L+   G ++    R+  LE R+  + + +  S  +S  A  R+ L  
Sbjct: 961  RKCQSMEREFKTELRKLDGVLEARSKRLSQLEERVKLLGAGSTSSIPNSPRASKRVSLDS 1020

Query: 240  RDQDLL 223
             D+ L+
Sbjct: 1021 EDKKLV 1026


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = -1

Query: 546 HHTSSEGDVDADTMNRSLESRVDLGLEIRSFKDEL---VGLRTDLR-ECRNDIAEFKELL 379
           H   S+GDV A T  R L  +V+ G+E +     L     L T  + E    +    E  
Sbjct: 216 HLNGSQGDVTA-TFWRKLSPKVEAGVECQLSPVGLNHSAALMTGPKPEGLTSVGVKYEFA 274

Query: 378 KSCH-GRIDTVEARVLGLEARLAEIVSTAAGSDLD 277
           +S + G++D+     + LE RLA  ++ A  S+LD
Sbjct: 275 QSIYRGQVDSKGRVGVYLERRLAPAITLAFSSELD 309


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 383 SSLNSAISFRHSLKSVLRPTSSSLKDRISKPRSTRDSSDRFIVSASTSPSLEV*CTPT 556
           SS+N ++  R S+ ++LRP S S     +    T D  D    S+S   +  +   P+
Sbjct: 114 SSINGSLLRRSSVSTILRPASESSYPNSNSETITYDIDDNVNPSSSLVDNFSISSVPS 171


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 489 SRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKELLKSC 370
           SR+D    +++++ +   L+  L +CR++I  F + + +C
Sbjct: 665 SRLDAIKNVKTYQIKFSDLQESLEKCRSEIESFDQKITAC 704


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 TSLKTKHSGFHRVDASMTRLEELLKLSDI 405
           TSL++   GF R+     RLE + +LSD+
Sbjct: 146 TSLESNQDGFERLHPLAERLERMSQLSDL 174


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 56  LSLPSMKLRLTAPIRSA*TMSRMSSFTPSFTAT 154
           LS  S +++ TAPI S     ++S  +PSFT++
Sbjct: 57  LSEMSKRVQATAPISSLEHFKQLSDISPSFTSS 89


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 705  RCSKCSDIFHKGCVSIPSTGAAP-RGWICPSCSAK 604
            +C  C + FH  CV + S   +    + CP C +K
Sbjct: 1471 QCHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSK 1505


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -1

Query: 561 TAVGVHHTSSEGDVDADTMNRSLESRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKEL 382
           +A+ V   S+E + D    ++S+     +  E+RS +  +  L TD++    D+   K+ 
Sbjct: 52  SAIRVEQLSAENNQD---FSKSVNQLSVVRSELRSLQSLMADLNTDIQASGRDLQNMKQQ 108

Query: 381 LKS 373
           L S
Sbjct: 109 LNS 111


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/96 (23%), Positives = 46/96 (47%)
 Frame = -1

Query: 507 MNRSLESRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDTVEARVLGL 328
           +  S +S +    ++ S +  +  L+ DLR+    +   K   K+    ID ++ +   L
Sbjct: 670 LEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETL 729

Query: 327 EARLAEIVSTAAGSDLDSTVAELRIQLRERDQDLLR 220
           EA+  ++ S+   SD  +T A L  +L +  +D+ R
Sbjct: 730 EAQRNDLHSSL--SDAKNTNAILSSELTKSSEDVKR 763


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 714 DCARCSKCSDIFHKGCVSIPSTGAAPRGWICPSCSAK 604
           +C R  +C+  FH+ C+    T +      CP C  K
Sbjct: 537 ECRRLKQCNHFFHRECIDQWLTSSQNS---CPLCRTK 570


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 705 RCSKCSDIFHKGCVSIPST 649
           +CS C ++FH  C+S P T
Sbjct: 57  QCSVCLNMFHLSCLSPPCT 75


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 393 TQRYHFGTLSSQFLGPPAHP*KIGFLNQGRHETP 494
           +  YHF  L + F  P  +   I F  +GR +TP
Sbjct: 386 SHEYHFKDLENYFKLPSEYNNGISFAAKGRRKTP 419


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 669 CVSIPSTGAAPRGWICPSCSAKV 601
           C SIPS G    G+ CP C AKV
Sbjct: 300 CHSIPSRG----GFHCPRCKAKV 318


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 663 SIPSTGAAPRGWICPSCSAKVPRGDNTATPVRGL 562
           S+P +    + ++CP CS K  R ++    +R L
Sbjct: 413 SVPRSPGG-KSFVCPECSKKFKRSEHLRRHIRSL 445


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 352 RVDASMTRLEELLKLSDIISALSQVSS*AHQLI 450
           R+ AS    +ELL  SD+IS    ++   H LI
Sbjct: 200 RLGASFVSFDELLSSSDVISINCPLTPATHDLI 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,670
Number of Sequences: 5004
Number of extensions: 56073
Number of successful extensions: 212
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)