Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11n04
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0176 - 23329589-23331043                                         33   0.18 
10_08_0058 + 14521922-14522779                                         31   1.3  
01_01_0127 + 1164871-1165346,1165835-1165934,1166007-1166102,116...    29   5.1  
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859...    28   6.8  
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980...    28   6.8  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    28   6.8  

>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = +2

Query: 377 IWTSGRKCNFAGC------DRGDLQPPNVNGWFWSGSG-AKIG-PTTQRNTGDWSYTGGY 532
           +W   +  NF G        +  +Q PN NG + +  G A+ G P   RN GD     G 
Sbjct: 333 MWVGQQPWNFGGYGMPRHQQKPPMQQPNRNGDYGTVRGTARRGRPAGGRNEGDTGNANGN 392

Query: 533 GQAQPDNREAAQGND 577
            +  PD R+  +G D
Sbjct: 393 ERGYPDRRQCGRGRD 407


>10_08_0058 + 14521922-14522779
          Length = 285

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 459 GQVREPRSGPPPNVTRAIGLTPVATVKRSLITEKLLKVTTSPVWRYLTTSIMMALNGT 632
           G    P    PP    +   TP AT  R+  T  LL     P W Y ++S     +G+
Sbjct: 2   GSTSGPACSAPPAALGSSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSSCTCKCSGS 59


>01_01_0127 +
           1164871-1165346,1165835-1165934,1166007-1166102,
           1166182-1166265,1166809-1166871
          Length = 272

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +2

Query: 458 WSGSGAKIGPTTQRNTGDWSYTGGYGQAQPDNREAAQGNDESCLAIL 598
           W  SG KI P   R    W+   GY Q    +R     N  S  AIL
Sbjct: 198 WESSGIKIIPVLSRPDDQWTGERGYVQQNAFSRMKKVVNPSSMGAIL 244


>05_03_0667 +
           16781857-16782001,16784506-16784544,16785229-16785910,
           16786003-16786087,16786747-16786888,16787391-16787575,
           16788011-16788143,16788317-16788405,16788530-16788604,
           16789060-16789173,16789264-16789305
          Length = 576

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 194 ARGVLHSYFFSWEHAPT-RSLEVDWLDARNICRRHCMDAVSLETPQENEFV 343
           A G  H    S  H  +  S++ D+LDA+++  R  +D V+   P E   +
Sbjct: 108 AEGFSHMLISSLRHLKSVESVQKDFLDAKHLAARLILDIVASIVPHEERIL 158


>05_03_0201 -
           9762563-9762843,9763037-9763919,9763988-9764036,
           9806710-9807680
          Length = 727

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -3

Query: 646 VASHIVPFNAIIIEVVKYRQTGLVVTLSSFSVIRLR----LTVATGVRPIARVTLGGGPD 479
           +  H++  N ++IE+++  QT ++        ++L     LT    + P +R+T G  P 
Sbjct: 33  LVQHLINQNRLLIEILQQHQTPILNLSQIQPQVQLEAVQALTPQVSMPPASRMTHGDVPH 92

Query: 478 LGSR 467
           +GS+
Sbjct: 93  VGSK 96


>02_02_0307 -
           8809724-8811589,8811681-8811762,8812130-8812242,
           8812361-8812492,8812681-8812864,8813002-8813135,
           8813552-8813656,8813738-8813839,8813930-8814022,
           8814136-8814456,8814595-8814696,8814791-8814853,
           8815213-8815708,8815964-8816124,8816213-8816743,
           8817077-8817118,8817203-8817334,8817639-8817703,
           8817858-8818169,8818262-8818334,8818425-8818517,
           8819440-8819501,8819740-8819809
          Length = 1777

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 309 TASMQCLRQMFLASSQSTSKLRVGACSQLKKYECSTPRASRYVEW 175
           +  +Q L+     S  ST+ +R      L+K EC  PR +R + W
Sbjct: 527 SGGVQRLQSSPQESEYSTNFVRKIMTDSLQKLECEAPRETRPIRW 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,002,311
Number of Sequences: 37544
Number of extensions: 550614
Number of successful extensions: 1650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)