Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11n03
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    27   3.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   3.0  

>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 333 YIYFRYLVTVTQVLYEVNTGPG 268
           Y +F+ L  V  +LY VNTGPG
Sbjct: 270 YDFFQTLSIVGGLLYLVNTGPG 291


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -2

Query: 236  HNLFTFHFTQNNVVL------YVIFCNFNHLLIYINPFSV 135
            H+LF  HF ++N+ L      YVIF   N   +YIN +++
Sbjct: 1064 HSLFNEHFCKSNLQLFFSTDTYVIFFEPNTENVYINSYNL 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,864
Number of Sequences: 5004
Number of extensions: 43832
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)