Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11n03
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1117 - 24096425-24097853,24097894-24098336                       30   1.3  
01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951     30   1.3  
08_01_0700 + 6171521-6171710,6172253-6172331,6172525-6172675           29   2.3  
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731...    29   4.1  
10_01_0206 - 2206359-2209142                                           28   5.4  
11_04_0310 + 16218439-16219383                                         28   7.1  
09_02_0312 - 7168332-7168408,7168492-7168621,7168793-7168861,716...    28   7.1  
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    27   9.4  

>07_03_1117 - 24096425-24097853,24097894-24098336
          Length = 623

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 386 KRLFFIFIK-QTSSLGGIRTRDPLCSDHVTYHYTRRP 493
           K L+F+F+K +T + GG+  R  L S + + H+  RP
Sbjct: 175 KGLYFLFVKSETKTPGGLTARPVLTSYYKSDHFKNRP 211


>01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951
          Length = 614

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 386 KRLFFIFIK-QTSSLGGIRTRDPLCSDHVTYHYTRRP 493
           K L+F+FIK +T + GG+  R  L S + + H+  RP
Sbjct: 160 KGLYFLFIKSETKTPGGLPARPVLTSYYKSDHFKHRP 196


>08_01_0700 + 6171521-6171710,6172253-6172331,6172525-6172675
          Length = 139

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 490 PSGVVVSDMITTQGVAGSNPAKGRC--LFNKYKKKSFPGLWMYIKYMYVYNKKILHLFPL 317
           P+ V ++ MIT Q VA    AKG    L +KYKK     ++++I    +         P+
Sbjct: 36  PTAVGINPMITVQSVAYC-VAKGIADSLSDKYKKYEKITIYIFINVFTIIKLDQQRFAPI 94

Query: 316 SGNSNTSSL 290
             N NT S+
Sbjct: 95  DINGNTISM 103


>01_05_0502 +
           22771428-22771466,22772327-22772430,22773043-22773129,
           22773212-22773287,22773393-22773467,22773639-22773692,
           22773745-22773918,22774002-22774061,22774135-22774251,
           22774448-22774542,22774811-22775013,22775177-22775274,
           22775451-22775587,22776154-22776219,22776300-22776465,
           22776537-22776659,22776763-22776845,22776943-22777084,
           22777334-22777363,22777587-22777657,22777742-22778333
          Length = 863

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 230 LFTFHFTQNNVVLYVIFC--NFNHLLIYINPFSV*WTVDIRPYA 105
           L + HF+   VVL +I C  N+N L+I+  PFS+ + + I  YA
Sbjct: 159 LSSVHFSC--VVLPIICCLVNWNKLIIHTEPFSLRYLLKINCYA 200


>10_01_0206 - 2206359-2209142
          Length = 927

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 300 QVLYEVNTGPG--NVA*LLKLSLS*FVYFSFYTKQCSVVCNIL*F*PSINLHKSIL 139
           Q+ +E+N  PG  +V  +L LS   F+Y   Y K C + C +  F     LH+ +L
Sbjct: 402 QLSWELNNNPGLDHVRNILYLS---FIYLPTYLKSCFLYCTL--FPEDYILHRKML 452


>11_04_0310 + 16218439-16219383
          Length = 314

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 444 RVRIPPREDVCLINIKKSLFQGYGC 370
           R+R  PR D CL+ + ++L++ Y C
Sbjct: 91  RLRHDPRGDGCLVEVYRALYEIYTC 115


>09_02_0312 -
           7168332-7168408,7168492-7168621,7168793-7168861,
           7168947-7169066,7169356-7169440,7169565-7169650,
           7169762-7169914,7170008-7170130,7170974-7171357
          Length = 408

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 481 VVVSDMITTQGVAGSNPAKGRCLFNKYKKKSFPGLW-MYIKYMYVYNKKILHLFP 320
           V V+      G AG+    G  L    +  +  GLW ++  Y  +YNK++L +FP
Sbjct: 82  VAVAATAAAAGEAGAEEGGG--LAKTLQLGALFGLWYLFNIYFNIYNKQVLKVFP 134


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 293 FTRLTRDQVTWRDCLNCHCHNLFTFHF 213
           F  ++ D V+  DC +C C++ +T HF
Sbjct: 204 FEDVSSDAVSTMDCGHCFCNDCWTEHF 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,245,918
Number of Sequences: 37544
Number of extensions: 244052
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)