Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m24
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    23   4.2  
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr...    23   4.2  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    23   4.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    22   9.7  

>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 29  SHCCFKFWNRSSFKFLLKA 85
           S C    WNR  + F+L+A
Sbjct: 593 SECIINEWNREKWMFVLRA 611


>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 129

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 87  PAFNRNLNDERFQNLKQQCD 28
           P  NRNL  + +  +KQ+CD
Sbjct: 48  PVNNRNLAFKAYDAVKQKCD 67


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 66  NDERFQNLKQQCDEMSSKYSA 4
           ND+  QNLK   ++   KYSA
Sbjct: 97  NDDFKQNLKSSSNKTEEKYSA 117


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 11  YLLDISSHCCFKFWNRSSFKFLLKAGSRE 97
           YL    S     FWN S  K+L+  G+ +
Sbjct: 866 YLRQCKSSPFINFWNVSYGKYLILTGNTD 894


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,746
Number of Sequences: 5004
Number of extensions: 3929
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)