Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m24
         (127 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0831 - 20133298-20133401,20133500-20133586,20133984-201340...    25   6.5  

>04_03_0831 -
           20133298-20133401,20133500-20133586,20133984-20134092,
           20134272-20134442,20136059-20136208,20136765-20136872,
           20137725-20137780,20138061-20138124,20138198-20138209
          Length = 286

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 27  RRIVASSFGIARHLNFC*KPDLVK*TLILTQ 119
           RR+V S +GI+R+L    K D +  T IL Q
Sbjct: 128 RRLVKSYYGISRNLLIKFKDDQIDETSILAQ 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,133
Number of Sequences: 37544
Number of extensions: 18979
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)