Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m24
         (127 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   1.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   2.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   3.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   3.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   3.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   7.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 78  NRNLNDERFQNLKQQCDEMSSKYSA 4
           N N+  E FQ   Q C E+S  YS+
Sbjct: 642 NLNVYPE-FQENVQLCSEISESYSS 665


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 66  NDERFQNLKQQCDEMSSKY 10
           ND+ F+N+ ++  E+ + Y
Sbjct: 108 NDDNFRNISEKYQEIFNGY 126


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 125 FFLSQYQSLFHEIRLSTE 72
           FF+++ QS FH    S E
Sbjct: 99  FFVNEKQSYFHIATTSNE 116


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 125 FFLSQYQSLFHEIRLSTE 72
           FF+++ QS FH    S E
Sbjct: 99  FFVNEKQSYFHIATTSNE 116


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 125 FFLSQYQSLFHEIRLSTE 72
           FF+++ QS FH    S E
Sbjct: 38  FFVNEKQSYFHIATTSNE 55


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +2

Query: 44  KFWNRSSFKFLLKAGSREIN 103
           + W++ + K L  +  R+IN
Sbjct: 57  EIWDQMTVKELANSAKRDIN 76


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 84 AFNRNLNDERFQNLKQQCDEMSSK 13
          AF    +DE F ++   CD  S K
Sbjct: 21 AFENLRDDEDFVDVTLACDGRSLK 44


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 77  TEI*MTSDSKT*SNNATKCLVNIQ 6
           TE  +   +K    NAT+C+  IQ
Sbjct: 108 TETELVFGAKLAWRNATRCIGRIQ 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,008
Number of Sequences: 438
Number of extensions: 198
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)