Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m22
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    30   0.28 
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   2.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.5  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   6.0  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   8.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.0  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   8.0  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +2

Query: 50  YPMAYFVNTDYKLKLECARITSDLLYKNKNEVAINRPKISSFKLQLNDVILDTIETIEYD 229
           +P+  ++N + KL  EC  I   +LY NKN+  IN   I      + +  ++     +  
Sbjct: 332 FPIHAYLNFNAKLYEEC--IPPSILYFNKNDENINVGNIEDITNYMYETFINEASLCDKF 389

Query: 230 LQNKVLTITAPVQDQ 274
           ++ K   I  P+  Q
Sbjct: 390 MKRKHERIETPLSSQ 404


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 605 WPFRHVKSLHDPKVLDEYLCLNANETT 525
           WP   +KS+  P  +   +CL  NE+T
Sbjct: 156 WPLNIIKSIGLPSQIKRKICLQLNEST 182


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 293 IYFNILNSSDSWEVPKYMKNLFDEMQLEPPAILPLG 400
           I +N   ++ +W++P Y +   +E Q  PP   PLG
Sbjct: 36  IPYNTSANNRNWQIPLYWQQRGNEFQASPPP--PLG 69


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 587 KSLHDPKVLDEYLCLNANETTALDSTRSFSHNC 489
           KS H  ++LD+   L+    T  D+T  F  NC
Sbjct: 78  KSHHRHQLLDQNSELSQENLTKCDTTHDFEKNC 110


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 530 SRWRSNKDI-HPKPLDRAEILRVEKATRGQSKNEL 631
           S + S+ D+ H K L+++EIL  ++  RGQ + +L
Sbjct: 190 SEFVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDL 224


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 122 LYKNKNEVAINRPKISSFKLQLNDVILDTIETIEYDLQNKVLT-ITAPVQDQELRKSIIY 298
           LY +   + +NRP +S  ++  ND+   T +TI  D  N+++T I A      LR S +Y
Sbjct: 484 LYYHLIRICLNRPFLSRKEVTANDL---TPKTICTDSINEIVTVIRAHRTANGLRYSTLY 540


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 614 VPWWPFRHVKSLHDPK 567
           +PW P +H+K  HD K
Sbjct: 259 IPWPPNQHIKFAHDDK 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,186
Number of Sequences: 5004
Number of extensions: 55953
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)