Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m22
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    29   0.043
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 12/58 (20%), Positives = 32/58 (55%)
 Frame = +2

Query: 62  YFVNTDYKLKLECARITSDLLYKNKNEVAINRPKISSFKLQLNDVILDTIETIEYDLQ 235
           Y    D+ + L+     S L +K+    +IN  ++ S+++ + D+++ ++ ++  DL+
Sbjct: 76  YSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLE 133


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 555 FIQNLWIVQRFYVSKR 602
           FI+N+W+   F+V+++
Sbjct: 89  FIKNIWVPDTFFVNEK 104


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 555 FIQNLWIVQRFYVSKR 602
           FI+N+W+   F+V+++
Sbjct: 89  FIKNIWVPDTFFVNEK 104


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +3

Query: 555 FIQNLWIVQRFYVSKR 602
           FI+N+W+   F+V+++
Sbjct: 28  FIKNIWVPDTFFVNEK 43


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 372  WNPPPFYH*VFRFGKVSTST 431
            WNPPPF    F  G  +  T
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPT 1183


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 197 ILDTIETIEYDLQNKVLT 250
           +LD    +EYDLQ  +++
Sbjct: 285 VLDLRSQLEYDLQTSIMS 302


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 422 ANFTKSKDLMVKWRGVPIAFHQTNFSCTLVLPNCH 318
           A  ++S  L  K  G P+A+     +  + LP+ H
Sbjct: 128 ARLSRSSALASKATGYPLAYVAAKLALGVRLPDIH 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,499
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)