Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m21
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   0.75 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    23   7.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    22   9.3  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    22   9.3  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 31  ITRSVEDLSFRR*DSQIGDLRRDVNTQPSDSSSAHQELRLPQ 156
           + +S+E LSF + +++      D+++Q  +S  A   LRL Q
Sbjct: 452 LKKSIEALSFEKSEAENSLSSHDIDSQKLNSEIADLSLRLQQ 493


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +2

Query: 2   GPSRRSTEQISPARWKIFPFVVKTPKLVTCDVM*TRNLLIHHQRIKNFGYH 154
           G  R  T +  P +W   P++++  +  T      R++L  H    N   H
Sbjct: 164 GAQRLITLEELPVQWHNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTH 214


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 94  RDVNTQPSDSSSAHQELRLPQSPHSR 171
           R V+ +PS +S +  ++  P SP++R
Sbjct: 575 RPVSRRPSSTSRSSVKITGPSSPNAR 600


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 94  VAGHQFGSLNDERKDLPPSG*YLLG 20
           +AGH+ GS+  E K + P+  +L G
Sbjct: 401 MAGHREGSMYKELKRIIPTAAWLSG 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,289
Number of Sequences: 5004
Number of extensions: 10434
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)