Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m21
         (185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0836 - 20922861-20923096,20923193-20923340,20923541-209236...    27   2.8  
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265...    26   3.7  
11_06_0743 + 26847652-26849424                                         26   4.9  
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235           26   4.9  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    25   6.5  
01_05_0333 + 21064693-21066006                                         25   6.5  
08_02_0998 - 23411422-23411649,23411897-23412625                       25   8.5  

>10_08_0836 -
           20922861-20923096,20923193-20923340,20923541-20923621,
           20924407-20924532
          Length = 196

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 161 GDCGSR-SS*CADDESEGCVFTSRRRSPI 78
           GD G R  S CADDE    +  SR+ +PI
Sbjct: 28  GDVGRRRGSGCADDEVVADILLSRKPAPI 56


>01_06_0529 -
           30026101-30026277,30026363-30026438,30026509-30026570,
           30026882-30027031,30027213-30027338,30028096-30028305,
           30028870-30028938,30029024-30029080,30029131-30029277,
           30029358-30029542,30029623-30029698,30029796-30029918,
           30030395-30030410,30031743-30032745,30033521-30033789,
           30034297-30034415
          Length = 954

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 142 VLDALMMNQKVACSHHVAGHQ 80
           V++ L    K A SHH AGHQ
Sbjct: 339 VVELLQQKLKAAKSHHQAGHQ 359


>11_06_0743 + 26847652-26849424
          Length = 590

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 134 CADDESEGCVFTSRRRSPIW 75
           C+  E+ GC +   R +P+W
Sbjct: 483 CSGGEAAGCGYVEERATPVW 502


>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
          Length = 1293

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 112  PSDSSSAHQELRLPQSPHSRR 174
            PSD  + H+    P+ PH+RR
Sbjct: 1215 PSDPEAGHEGAPCPRRPHARR 1235


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 175 ICENAGIVVAEVLDALMM 122
           +C+N G+++ E LDAL +
Sbjct: 717 VCKNCGVIIFEGLDALAL 734


>01_05_0333 + 21064693-21066006
          Length = 437

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 73  SQIGDLRRDVNTQPSDSSSAHQELRLPQSPHSRR 174
           SQ  ++RR  + QP + +  HQ+ R  +  +S+R
Sbjct: 379 SQAANMRRGSSEQPRERAPLHQQRRAGRPVNSQR 412


>08_02_0998 - 23411422-23411649,23411897-23412625
          Length = 318

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 115 KVACSHHVAGHQFGSLNDERKDLPPSG*YLLGRPTR 8
           +V   H V+  + G  +DE  DL   G  LLG P R
Sbjct: 132 QVVGGHPVSAEEVGVDHDEAPDLGAVGEPLLGHPHR 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,892,920
Number of Sequences: 37544
Number of extensions: 72697
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)