Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11m21
(185 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93390-3|CAB07676.1| 680|Caenorhabditis elegans Hypothetical pr... 28 0.76
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 26 4.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 26 4.1
AC006761-4|AAL32243.1| 498|Caenorhabditis elegans Hypothetical ... 26 4.1
AC006761-3|AAL32244.2| 860|Caenorhabditis elegans Hypothetical ... 26 4.1
U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical pr... 25 5.4
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein. 25 5.4
AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical ... 25 5.4
AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstrea... 25 5.4
U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical pr... 25 7.1
U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical p... 25 7.1
AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical ... 25 7.1
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec... 25 9.4
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 25 9.4
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 25 9.4
>Z93390-3|CAB07676.1| 680|Caenorhabditis elegans Hypothetical
protein T23B5.1a protein.
Length = 680
Score = 28.3 bits (60), Expect = 0.76
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 184 FFFICENAGIVVAEVLDALMMNQKV 110
+F CE A IVV+E LD + +K+
Sbjct: 226 YFETCEKADIVVSETLDCCVFGEKI 250
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 97 DVNTQPSDSSSAHQELRLPQSPH 165
DV P+ SS A E +P+SPH
Sbjct: 2543 DVPHSPAPSSHAESEQPVPESPH 2565
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 97 DVNTQPSDSSSAHQELRLPQSPH 165
DV P+ SS A E +P+SPH
Sbjct: 2543 DVPHSPAPSSHAESEQPVPESPH 2565
>AC006761-4|AAL32243.1| 498|Caenorhabditis elegans Hypothetical
protein Y41G9A.4a protein.
Length = 498
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 104 TRNLLIHHQRIKNFGYHNPRILAD 175
TRN L H R++NF Y N +++AD
Sbjct: 310 TRNNLPSHIRLENFTYDN-KVIAD 332
>AC006761-3|AAL32244.2| 860|Caenorhabditis elegans Hypothetical
protein Y41G9A.4b protein.
Length = 860
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 104 TRNLLIHHQRIKNFGYHNPRILAD 175
TRN L H R++NF Y N +++AD
Sbjct: 310 TRNNLPSHIRLENFTYDN-KVIAD 332
>U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical
protein F45E4.7c protein.
Length = 784
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 170 RECGDCGSRSS*CADDESEGC 108
R+C D R S C DDE E C
Sbjct: 153 RQCIDIAFRLSSCIDDEIEPC 173
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 170 RECGDCGSRSS*CADDESEGC 108
R+C D R S C DDE E C
Sbjct: 237 RQCIDIAFRLSSCIDDEIEPC 257
>AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein.
Length = 481
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 91 RRDVNTQPSDSSSAHQELRLPQSPHSRR*KK 183
RR N + SSS+ SPHSRR +K
Sbjct: 443 RRRTNRHDTSSSSSEDSDSPSDSPHSRRQRK 473
>AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical
protein Y20F4.5 protein.
Length = 725
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 103 NTQPSDSSSAHQELRLPQSPHS 168
+TQPS SS A P++PHS
Sbjct: 100 DTQPSTSSIAESSSSPPRTPHS 121
>AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstream,
human gene xe7related protein 7 protein.
Length = 495
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 91 RRDVNTQPSDSSSAHQELRLPQSPHSRR*KK 183
RR N + SSS+ SPHSRR +K
Sbjct: 443 RRRTNRHDTSSSSSEDSDSPSDSPHSRRQRK 473
>U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical
protein K08F11.2 protein.
Length = 886
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 103 NTQPSDSSSAHQELRLPQSPHS 168
+TQPS SS A P++PHS
Sbjct: 100 DTQPSTSSIAESSSLPPRTPHS 121
>U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical
protein K08D10.1 protein.
Length = 895
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 103 NTQPSDSSSAHQELRLPQSPHS 168
+TQPS SS A P++PHS
Sbjct: 100 DTQPSTSSIAESSSLPPRTPHS 121
>AL132877-9|CAC70109.2| 529|Caenorhabditis elegans Hypothetical
protein Y105E8B.3 protein.
Length = 529
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 37 RSVEDLSFRR*DSQIGDLRRDVNTQPSDSSSAHQELRLPQS 159
R EDL DS D+ +P D H+EL+ ++
Sbjct: 333 RQEEDLGEDEDDSDDSKSMEDIQEEPEDLEKDHEELQAQEN 373
>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
receptor TOL-1 protein.
Length = 1221
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 121 NQKVACSHHVAGHQFGSLNDERKDL 47
++ +CSH V GHQ + +KDL
Sbjct: 672 SETASCSHAVDGHQIQIQSLSKKDL 696
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 172 CENAGIVVAEVLDALMMNQKVACSHHVAGHQFGSLNDERKD 50
CEN +++A+ L A + K A S +DER D
Sbjct: 416 CENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMD 456
>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
(drosophila) family protein 1 protein.
Length = 1221
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 121 NQKVACSHHVAGHQFGSLNDERKDL 47
++ +CSH V GHQ + +KDL
Sbjct: 672 SETASCSHAVDGHQIQIQSLSKKDL 696
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,159,234
Number of Sequences: 27780
Number of extensions: 63048
Number of successful extensions: 164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -