Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m13
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   1.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   3.9  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   3.9  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 226 HIFFQSDIRWR-QQHDMHKQHIFKVLVLFVKSFIFNI*IFQQCVFQLYIKH*ISFEYF 56
           ++  + D RW+ ++H + KQ ++  ++  + +FI        C+F  +I+H     +F
Sbjct: 549 NLLVRKDGRWQFREHRILKQ-LWPYIIAMILNFIVRSSFIFYCIFPNHIQHSSGISFF 605


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 135 HLFLIFKYFNSVFFNYIL 82
           +L+++F YF S+F  Y+L
Sbjct: 198 YLYVLFTYFISIFLLYVL 215


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 155 YFEYVLFMHIMLLAPSYIRLEENMFYLLLC 244
           +  Y L +  M+ +  ++  E+N+FYL LC
Sbjct: 361 FLHYCLDISEMISSYLHVEDEKNVFYLALC 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,068,190
Number of Sequences: 5004
Number of extensions: 19745
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)