Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m13
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0296 + 2284385-2285629,2287632-2288594                           27   2.7  
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148...    27   4.7  
11_01_0751 - 6320726-6321108,6321138-6321278,6321404-6321574,632...    26   8.3  

>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 198 HLISDWKKICFIYYYV-KRY*CKINLCYLIKII 293
           HL SDW K+  +  YV KRY   +  C L +I+
Sbjct: 408 HLFSDWTKVMVVSEYVRKRY---VRCCLLDRIL 437


>09_04_0117 +
           14813472-14814113,14814194-14814404,14814552-14814846,
           14815059-14815448,14815528-14815605,14815692-14815926
          Length = 616

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 123 LKINDFTNKT-NTLNMCCLCISCCWRHLISDWKKICF 230
           +K +   N+T +T+++C +   CC+ +++  W+K  F
Sbjct: 3   VKASSADNRTRSTVSLCIVIGMCCFFYILGAWQKSGF 39


>11_01_0751 -
           6320726-6321108,6321138-6321278,6321404-6321574,
           6321912-6322191
          Length = 324

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 232 IKHIFFQSDIRWRQQHDMHKQHIFKVLVLFVKSFIFNI*IFQQC-VFQLY 86
           I  I    D  WR+ H+   +  +KV+VL        + + ++C VFQLY
Sbjct: 193 INEIALSIDTEWREDHEPDDKKCYKVVVL-------QLCVNRRCLVFQLY 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,668,866
Number of Sequences: 37544
Number of extensions: 86622
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)