Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m13
         (330 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209842-1|BAD93079.1|  267|Homo sapiens transforming growth fac...    25   6.2  
U80761-1|AAB91452.1|  124|Homo sapiens CTG26 alternate open read...    25   6.8  

>AB209842-1|BAD93079.1|  267|Homo sapiens transforming growth
           factor, beta 2 variant protein.
          Length = 267

 Score = 25.4 bits (53), Expect(2) = 6.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 168 CCLCISCCWRHLIS 209
           CC C  CC+R  +S
Sbjct: 206 CCCCCCCCFRQTLS 219



 Score = 21.4 bits (43), Expect(2) = 6.2
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 165 MCCLCISCC 191
           +CC C  CC
Sbjct: 203 ICCCCCCCC 211


>U80761-1|AAB91452.1|  124|Homo sapiens CTG26 alternate open reading
           frame protein.
          Length = 124

 Score = 25.4 bits (53), Expect(2) = 6.8
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 168 CCLCISCCW 194
           CC C  CCW
Sbjct: 110 CCCCCCCCW 118



 Score = 21.4 bits (43), Expect(2) = 6.8
 Identities = 5/11 (45%), Positives = 6/11 (54%)
 Frame = +3

Query: 159 LNMCCLCISCC 191
           +  CC C  CC
Sbjct: 100 MGCCCCCCCCC 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,902,735
Number of Sequences: 237096
Number of extensions: 512569
Number of successful extensions: 1002
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)