Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m10
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    27   2.0  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   8.0  

>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 168 REVTSSGCFIFSHLCTFTDIKQLINHHYYTFKP 70
           R  +SSG    S   T T    ++NH YY F+P
Sbjct: 136 RNGSSSGIIALSKAETDTYWNAILNHDYYDFRP 168


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 227 ISVKWWSFTEIISVDFLEDSEKL 159
           + +++W+    + VD+LED E+L
Sbjct: 107 VFIQFWNLPGELKVDYLEDQERL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,318
Number of Sequences: 5004
Number of extensions: 49557
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)