Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m10
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 498 FTNICMNVEFQQLHIINLIFMKYLTVVMLVYF 403
           F+NI  N  F++ HI+ +IF+ +   V+ + F
Sbjct: 84  FSNILSNPSFEKFHIVLIIFLLFGGAVVTIQF 115


>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 269 NWDEIK*DDMG*NIISVKWWSFTEIISVDFLE-DSEKLRPAAVSFFHICALSQI 111
           +WD +K D       S+K W F +++++ F+  +   +    V+FF  C LS I
Sbjct: 116 SWDLLKEDWFNIYATSLKVWPFVQVVNLCFVPLNYRVILNQVVAFFWNCYLSYI 169


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 214 HFTEIIFHPISSHLISSQL 270
           H +EI  HPI SH+ SS L
Sbjct: 230 HISEIFVHPIVSHMASSSL 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,978
Number of Sequences: 27780
Number of extensions: 265913
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)