Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m09
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   294   3e-80
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    28   5.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   7.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   7.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   7.4  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  294 bits (722), Expect = 3e-80
 Identities = 135/179 (75%), Positives = 148/179 (82%)
 Frame = +2

Query: 50  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLXSDEYEQL 229
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH+ S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 409
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 410 KPQGTVARVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERD 586
           KPQG VARV IG  + S+R  +      IEA RRAKFKFPGRQ I  S+KWGFTK++R+
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDRE 179


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 414 GLPNAPRIPVWSLSAPA 364
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 395 RGAFGKPQGTVARVRIGQPIMSVRSXDRWKAQVIE--ALRRAKFKFPGRQK 541
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 435 FALDSPSCPCALXTGGRHRSSRLCAVPSSSSPDVKR 542
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 172 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 71
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 172 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 71
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 172 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 71
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 335  RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 159
            RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 1879 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 1936

Query: 158  PNRR 147
             +++
Sbjct: 1937 HHQK 1940


>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
           protein R11A8.7d protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 335 RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 159
           RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 700 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 757

Query: 158 PNRR 147
            +++
Sbjct: 758 HHQK 761


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 335  RGKGEVSCGYGTD-PFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSY 159
            RG   V+  + ++   +S++  TY    +  PK LSSA   R++ S    +S QRS  S+
Sbjct: 1879 RGNLSVASSFSSEGTSKSAVDSTYAPSSI--PKSLSSASIARQSASPIPQQSSQRSAKSH 1936

Query: 158  PNRR 147
             +++
Sbjct: 1937 HHQK 1940


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +3

Query: 90  INRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWXPTNMNS*AQRLWRQD 254
           + R+ + GS   + +P+  +++W R+ + L    C C      M    Q L+ ++
Sbjct: 82  VKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRDKQALYEKE 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,259
Number of Sequences: 27780
Number of extensions: 341938
Number of successful extensions: 881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)