Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11m04
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 211 3e-55
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 209 1e-54
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 209 1e-54
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 183 1e-46
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 181 3e-46
Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical pr... 175 3e-44
Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical pr... 175 3e-44
Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical pr... 175 3e-44
U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock prot... 128 2e-30
X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein. 125 2e-29
Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical p... 106 1e-23
Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical pr... 106 1e-23
Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical pr... 95 4e-20
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 89 2e-18
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical p... 31 0.91
Z54269-2|CAA91019.1| 278|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical ... 28 6.4
AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein. 28 6.4
U21324-16|AAK93841.1| 169|Caenorhabditis elegans Arp2/3 complex... 27 8.5
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 211 bits (516), Expect = 3e-55
Identities = 98/130 (75%), Positives = 116/130 (89%), Gaps = 1/130 (0%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQD-GERLIGDAAKNQLTT 423
GT+IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAF+ D G+RLIGDAAKNQLT
Sbjct: 33 GTIIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFSGDQGDRLIGDAAKNQLTI 92
Query: 424 NPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISA 603
NPENT+FDAKRLIGR+++D+TVQ D+K +PFKV++K++KP V+V+ +K F PEE+SA
Sbjct: 93 NPENTIFDAKRLIGRDYNDKTVQADIKHWPFKVIDKSNKPSVEVKVGSDNKQFTPEEVSA 152
Query: 604 MVLTKMKETA 633
MVL KMKE A
Sbjct: 153 MVLVKMKEIA 162
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 209 bits (510), Expect = 1e-54
Identities = 97/129 (75%), Positives = 115/129 (89%), Gaps = 1/129 (0%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQD-GERLIGDAAKNQLTTN 426
T+IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAF+ D G+RLIGDAAKNQLT N
Sbjct: 34 TIIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFSGDQGDRLIGDAAKNQLTIN 93
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
PENT+FDAKRLIGR+++D+TVQ D+K +PFKV++K++KP V+V+ +K F PEE+SAM
Sbjct: 94 PENTIFDAKRLIGRDYNDKTVQADIKHWPFKVIDKSNKPSVEVKVGSDNKQFTPEEVSAM 153
Query: 607 VLTKMKETA 633
VL KMKE A
Sbjct: 154 VLVKMKEIA 162
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 209 bits (510), Expect = 1e-54
Identities = 97/131 (74%), Positives = 117/131 (89%), Gaps = 1/131 (0%)
Frame = +1
Query: 244 IGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQD-GERLIGDAAKNQLT 420
+GT+IGIDLGTTYSCVGV+KNGRVEIIANDQGNRITPSYVAF+ D GERLIGDAAKNQLT
Sbjct: 29 MGTIIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFSGDQGERLIGDAAKNQLT 88
Query: 421 TNPENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEIS 600
NPENT+FDAKRLIGR ++++TVQ D+K +PFK+V+K++KP+V+V+ K F PEE+S
Sbjct: 89 INPENTIFDAKRLIGRFYNEKTVQQDIKHWPFKIVDKSNKPNVEVKVGSETKQFTPEEVS 148
Query: 601 AMVLTKMKETA 633
AMVLTKMK+ A
Sbjct: 149 AMVLTKMKQIA 159
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 183 bits (445), Expect = 1e-46
Identities = 89/127 (70%), Positives = 105/127 (82%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
+GIDLGTTYSCVGV+ +G+VEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 7 VGIDLGTTYSCVGVFMHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 65
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVE-KNSKPHVQVQTSQGDKVFAPEEISAMVL 612
TVFDAKRLIGR++ D VQ D+K +PFKV+ + +KP VQV+ +K+F PEEIS+MVL
Sbjct: 66 TVFDAKRLIGRKFDDPAVQSDMKHWPFKVISAEGAKPKVQVEYKGENKIFTPEEISSMVL 125
Query: 613 TKMKETA 633
KMKETA
Sbjct: 126 LKMKETA 132
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 181 bits (441), Expect = 3e-46
Identities = 88/127 (69%), Positives = 105/127 (82%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
+GIDLGTTYSCVGV+ +G+VEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 7 VGIDLGTTYSCVGVFMHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 65
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVE-KNSKPHVQVQTSQGDKVFAPEEISAMVL 612
TVFDAKRLIGR++ D VQ D+K +PFKV+ + +KP VQV+ +K+F PEEIS+MVL
Sbjct: 66 TVFDAKRLIGRKFDDPAVQSDMKHWPFKVISAEGAKPKVQVEYKGENKIFTPEEISSMVL 125
Query: 613 TKMKETA 633
KMK+TA
Sbjct: 126 LKMKKTA 132
>Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.5 protein.
Length = 645
Score = 175 bits (425), Expect = 3e-44
Identities = 84/126 (66%), Positives = 99/126 (78%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG+Y+NG+VEI+AN +GN+ TPSYVAFT D ERL+GDAAK+Q NPEN
Sbjct: 7 IGIDLGTTYSCVGIYQNGKVEILANSEGNKTTPSYVAFT-DTERLVGDAAKDQAARNPEN 65
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
TVFDAKRLIGR + + TVQ D K +PF V K KP ++V+ + F PEEISAMVL
Sbjct: 66 TVFDAKRLIGRRFDESTVQSDCKHWPFGVKGKQGKPVIEVEVKGEKRQFNPEEISAMVLQ 125
Query: 616 KMKETA 633
KMKETA
Sbjct: 126 KMKETA 131
>Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.4 protein.
Length = 645
Score = 175 bits (425), Expect = 3e-44
Identities = 84/126 (66%), Positives = 99/126 (78%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG+Y+NG+VEI+AN +GN+ TPSYVAFT D ERL+GDAAK+Q NPEN
Sbjct: 7 IGIDLGTTYSCVGIYQNGKVEILANSEGNKTTPSYVAFT-DTERLVGDAAKDQAARNPEN 65
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
TVFDAKRLIGR + + TVQ D K +PF V K KP ++V+ + F PEEISAMVL
Sbjct: 66 TVFDAKRLIGRRFDESTVQSDCKHWPFGVKGKQGKPVIEVEVKGEKRQFNPEEISAMVLQ 125
Query: 616 KMKETA 633
KMKETA
Sbjct: 126 KMKETA 131
>Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical
protein C12C8.1 protein.
Length = 643
Score = 175 bits (425), Expect = 3e-44
Identities = 84/126 (66%), Positives = 100/126 (79%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG+Y+NG+VEI+AN +GN+ TPSYVAFT D ERL+GDAAK+Q NPEN
Sbjct: 7 IGIDLGTTYSCVGIYQNGKVEILANSEGNKTTPSYVAFT-DTERLVGDAAKDQAARNPEN 65
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
TVFDAKRLIGR + ++TVQ D+K +PF V K KP V+V+ + F EEISAMVL
Sbjct: 66 TVFDAKRLIGRRFDEETVQSDIKHWPFTVKGKQGKPVVEVEVKGEKREFNAEEISAMVLQ 125
Query: 616 KMKETA 633
KMKETA
Sbjct: 126 KMKETA 131
>U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock protein
protein 6 protein.
Length = 657
Score = 128 bits (310), Expect = 2e-30
Identities = 69/129 (53%), Positives = 86/129 (66%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
G VIGIDLGTT SCV + + ++I N +G R TPS VAFT DGERL+G AK Q TN
Sbjct: 31 GHVIGIDLGTTNSCVSIMEGKTPKVIENAEGVRTTPSTVAFTADGERLVGAPAKRQAVTN 90
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
NT+F KRLIGR + D VQ D+K P+K+V K S V+ +QG KV++P ++ A
Sbjct: 91 SANTLFATKRLIGRRYEDPEVQKDLKVVPYKIV-KASNGDAWVE-AQG-KVYSPSQVGAF 147
Query: 607 VLTKMKETA 633
VL KMKETA
Sbjct: 148 VLMKMKETA 156
>X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein.
Length = 487
Score = 125 bits (302), Expect = 2e-29
Identities = 68/129 (52%), Positives = 84/129 (65%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
G VIGIDLGTT SCV + + ++I N +G R TPS VAFT DGERL+G AK Q TN
Sbjct: 31 GHVIGIDLGTTNSCVSIMEGKTPKVIENAEGVRTTPSTVAFTADGERLVGAPAKRQAVTN 90
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
NT+F KRLIGR + D VQ D+K P+K+V K S V+ +QG K + P ++ A
Sbjct: 91 SANTLFATKRLIGRRYEDPEVQKDLKVVPYKIV-KASNGDAWVE-AQG-KEYPPSQVGAF 147
Query: 607 VLTKMKETA 633
VL KMKETA
Sbjct: 148 VLMKMKETA 156
>Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 106 bits (255), Expect = 1e-23
Identities = 52/127 (40%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTT+SCV Y+NG+V I+ N+ G R TPS +A +DG+ LIG AK+ + N
Sbjct: 3 IGIDLGTTFSCVAYYQNGQVNILENENGCRTTPSVLAVGEDGDLLIGQHAKD-VIGKATN 61
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKV-VEKNSKPHVQVQTSQGDKVFAPEEISAMVL 612
++FD KR+IGR + D +Q D+ +PFKV + N P++++ ++ F+ +S+++L
Sbjct: 62 SLFDVKRIIGRRYDDVLLQRDMPLWPFKVEKDDNGIPYLEIHKNEKPLKFSAVTVSSLIL 121
Query: 613 TKMKETA 633
+K A
Sbjct: 122 RCLKYNA 128
>Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 106 bits (255), Expect = 1e-23
Identities = 52/127 (40%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTT+SCV Y+NG+V I+ N+ G R TPS +A +DG+ LIG AK+ + N
Sbjct: 3 IGIDLGTTFSCVAYYQNGQVNILENENGCRTTPSVLAVGEDGDLLIGQHAKD-VIGKATN 61
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKV-VEKNSKPHVQVQTSQGDKVFAPEEISAMVL 612
++FD KR+IGR + D +Q D+ +PFKV + N P++++ ++ F+ +S+++L
Sbjct: 62 SLFDVKRIIGRRYDDVLLQRDMPLWPFKVEKDDNGIPYLEIHKNEKPLKFSAVTVSSLIL 121
Query: 613 TKMKETA 633
+K A
Sbjct: 122 RCLKYNA 128
>Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical
protein F54C9.2 protein.
Length = 450
Score = 95.1 bits (226), Expect = 4e-20
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Frame = +1
Query: 253 VIGIDLGTTYSCVGVYK--NGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
+ GIDLGTTYS +G+Y G I+ +D G + PS VAF +G LIG A Q N
Sbjct: 35 IAGIDLGTTYSSIGIYHAVTGETIILPDDLGKKSVPSVVAFLPNGTVLIGTRATEQQEHN 94
Query: 427 PENTVFDAKRLIGR--EWSDQTVQHDVKFFPFKV-VEKNSKPHVQVQTSQGDKVFAPEEI 597
P+ T++DAKR IGR E +++ D K +PFK+ ++ K ++ G K PEEI
Sbjct: 95 PKRTIYDAKRFIGRNFEKNNKDFLSDQKRYPFKINLDSEGKAFFEIPLDSGTKNVYPEEI 154
Query: 598 SAMVLTKMKETA 633
++++ +K A
Sbjct: 155 GSLIIGYLKSAA 166
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 89.4 bits (212), Expect = 2e-18
Identities = 49/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNP 429
+V+G D+G +GV + G +E+I ND TP+ V+F +R +G AA+ +TTN
Sbjct: 2 SVLGFDIGNLNCYIGVARQGGIEVITNDYSLHATPACVSFGPK-DRSMGVAARQAVTTNI 60
Query: 430 ENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVE-KNSKPHVQVQTSQGDKVFAPEEISAM 606
+NTV + K LIGR++SD Q + F P KVV+ N VQV F PE++ A
Sbjct: 61 KNTVINFKHLIGRKFSDPVAQRFIPFIPCKVVKLPNDDIGVQVSYLGEPHTFTPEQVLAA 120
Query: 607 VLTKMK 624
+LTK++
Sbjct: 121 LLTKLR 126
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 46.0 bits (104), Expect = 2e-05
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = +1
Query: 262 IDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPENT 438
IDLGT + +G+ K G ++I N + R TP+ V QDG R DAA P
Sbjct: 29 IDLGTQFLKIGIVKPGIPMDIALNTESRRKTPN-VVMIQDGHRTFADAAIGMQVRYPHLV 87
Query: 439 VFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLTK 618
L+G+ + + + F V+ K + G + + E ++AM+L
Sbjct: 88 HGQLNDLVGKSTQHPSFELFKRRNTFFEVDDAPKNASSINFKLGGESYTVEALTAMILAN 147
Query: 619 MKE 627
K+
Sbjct: 148 AKK 150
>Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical
protein R09D1.14 protein.
Length = 150
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 271 GTTYSCVGVYKNGRVEIIANDQGNRITPSYVAF---TQDGE-RLIGDAAKNQLT 420
G +G Y + +I +DQ + +T + AF T DG+ ++ GD AKN+ T
Sbjct: 40 GCNKRIIGYYFATQTSVITSDQVSNLTHAVFAFVNITSDGQLQIDGDLAKNRFT 93
>Z54269-2|CAA91019.1| 278|Caenorhabditis elegans Hypothetical
protein F02C12.2 protein.
Length = 278
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 346 ITPSYVAFTQDGERLIGDAAK-----NQLTTNPENTVFDAKRLIGREWSDQTVQHDVKFF 510
I P+ + F+ + LI K N L N ++ DAK+ G + +T + +K
Sbjct: 63 IVPADITFSTGQDELISQTLKKFGRINILVNNAGASIPDAKKRTGIDQGIETYEQVMKLN 122
Query: 511 PFKVVEKNSKPHVQVQTSQGDKV 579
V+E K + S+G+ V
Sbjct: 123 VQSVIEMTQKVRPHLAKSRGEIV 145
>AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical
protein Y54G9A.7 protein.
Length = 244
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 424 NPENTVFDAKRLIGREWSDQTVQHDVKFFP 513
NPE V D R+ +EW D+ K +P
Sbjct: 166 NPEKYVKDTIRMANKEWQDELAPTGRKLYP 195
>AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein.
Length = 244
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 424 NPENTVFDAKRLIGREWSDQTVQHDVKFFP 513
NPE V D R+ +EW D+ K +P
Sbjct: 166 NPEKYVKDTIRMANKEWQDELAPTGRKLYP 195
>U21324-16|AAK93841.1| 169|Caenorhabditis elegans Arp2/3 complex
component protein 6 protein.
Length = 169
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 508 FPFKVVEKNSKPHVQVQTSQ 567
F +VVE+++KP V+VQTS+
Sbjct: 25 FSSQVVERHNKPEVEVQTSK 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,600
Number of Sequences: 27780
Number of extensions: 286852
Number of successful extensions: 690
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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