Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11m04
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 286 MSKWYPNRYR*LCRCPYLSPSCRR 215
           MS  Y N ++  CRC   +PS  R
Sbjct: 319 MSAKYRNAFKETCRCSPSNPSITR 342


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 200 SRPFVPTTRRRKIRTSAQSSVSIWV 274
           ++P + + RRR  R +    V++WV
Sbjct: 141 TQPLIYSRRRRSKRLAGLMIVAVWV 165


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 194 WWSRPFVP--TTRRRKIRTSAQSSVSIW 271
           WWSRP  P  TT +  I    +  +S+W
Sbjct: 45  WWSRPREPAQTTSKAGIHRK-KVLLSVW 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,068
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)