Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l21
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    27   2.0  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    26   4.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   6.0  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   6.0  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   7.9  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   7.9  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 133 VLGATGFTGKSTVKFLTELTKEPEYHNVKWGIAGRSEKK 249
           +LGATG  G+   +F+T L+  PE+     G + RS  K
Sbjct: 8   ILGATGTVGQ---RFITLLSDHPEFKIAVLGASARSAGK 43


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 529 IVPSCGLASIPSAAGLMFLQNQFK-----DIPDVVDCYFRFDIPRRSYAPI 666
           ++ S GL +I + +G+ F    +K     D+PD+   Y +FD   R+   I
Sbjct: 5   LIKSFGLIAIGAISGVTFTHFYYKGYQGSDVPDLTPRYTKFDSAGRALESI 55


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 281 NSESSLSKMLSFFSDRPAIPHFTL*YSGSLVNSVKNFTVDFPVNPVAPNTSKSNFS 114
           +S SSL  + S  +  P +P      S S  N     T   P+NP AP T + + S
Sbjct: 191 SSFSSLPLVSSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRESIS 246


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 397 ILGEAVIKSCIETRTHYVDIS-AEIPQIFNAFRNNHNAAEEGNVL 528
           ILG A+ +S  E  THY +++ +            H  A EG++L
Sbjct: 296 ILGVAINQSINEDMTHYAEVAVSTYESCIEIIEKFHAIAYEGSIL 340


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
 Frame = +1

Query: 238 SEKKLNILLKELSELK-IRTSSIVVIKCDISNQTELRNATGRTKILINCTGPHSILGEAV 414
           ++ +L +  K  S  K IR SS   +   +SN+ EL+ +  R    ++     + +G AV
Sbjct: 3   TKTQLELFTKLTSNDKAIRLSSAAQLIDSLSNEEELKYSLNRLTKGLSSGRESARIGFAV 62

Query: 415 IKSCIETRTHYVDISAEIPQI--FNAFRNNHNAAEEGNVLIVPSCGLASIPSAAGLMFLQ 588
             + + TRT  +  +  +  +   N    N    +E +       GL SI  +  L   +
Sbjct: 63  ALTELLTRTKDIRATHVLDLLVKHNTASGNLKGQDERDFYFGLLFGLQSIVYSGILTHKE 122

Query: 589 NQFKDIPDVVD 621
           +  +D   VVD
Sbjct: 123 STIEDFQRVVD 133


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 341 NSV*LLMSHFMTTMLDVLIF-NSESSLSKMLSFFS 240
           NSV  L+S    ++ +V  F N+ S LSK LSFFS
Sbjct: 86  NSVFQLLSKIRNSVPNVSAFRNNLSILSKELSFFS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,837
Number of Sequences: 5004
Number of extensions: 52347
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)