Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l21
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1142 + 24287674-24288357,24291451-24292137                       77   1e-14
03_05_0148 - 21275375-21275540,21275621-21275733,21276394-21276480     30   2.0  
02_05_0758 + 31541991-31543139                                         29   2.7  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    29   4.7  
10_08_0488 + 18258178-18258228,18258864-18258926,18259006-182591...    28   6.2  

>07_03_1142 + 24287674-24288357,24291451-24292137
          Length = 456

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 2/189 (1%)
 Frame = +1

Query: 115 EKLDLLVLGATGFTGKSTVKFLTELTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRT 294
           E  D+++ GA+GFTG+  ++   +             +AGRS  ++   L+  +      
Sbjct: 13  EVFDVVIFGASGFTGRYVIREALKFLPPSSSPLRSLALAGRSRDRVAAALRWAAGPGGAA 72

Query: 295 SSIVVIKCDISNQTELRNATGRTKILINCTGPHSILGEAVIKSCIETRTHYVDISAEIPQ 474
             + ++  D S+   L     R +++++C GP  + G  V  +C       +DIS E   
Sbjct: 73  PDLPILVADASDPASLAALAARARVVLSCAGPFRLHGRQVAAACAAAGADCLDISGEPEF 132

Query: 475 IFNAFRNNHNAAEEGNVLIVPSCGLASIPSAAGLMFLQNQF--KDIPDVVDCYFRFDIPR 648
           +       H AA +   LI+ +CG  SIP+  G +F   Q+    +P  V  Y   +  +
Sbjct: 133 MERVEAEFHEAAAKNGSLIISACGFDSIPAELGFLFHSRQWAPPSVPVTVQAYLSLESDK 192

Query: 649 RSYAPIGQH 675
           R     G +
Sbjct: 193 RIVGNFGTY 201


>03_05_0148 - 21275375-21275540,21275621-21275733,21276394-21276480
          Length = 121

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +1

Query: 259 LLKELSELKIRTSSIVVIKCDISNQTELRNATGRTKILINCTGPHSILGEAVIKSC 426
           +LKEL ELK +T   ++   +   + E  +     ++L +C  P     + ++  C
Sbjct: 32  ILKELDELKTKTKKAIIEDVEKVKRLENEDRNALNRLLTSCGMPRGAFRDKLVFGC 87


>02_05_0758 + 31541991-31543139
          Length = 382

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 490 RNNHNAAEEGNVLIVPSCGLASIPSA----AGLMFLQNQFKDIPDVVDCYFRFDIPRRS 654
           RNN  +  + N+  +  CGL +   A    +G   L  Q + + ++V C  +F +PR S
Sbjct: 173 RNNIESEVKPNIAFLEQCGLTTCDIAKILMSGSRILIMQPEHVKEIVACADKFGMPRES 231


>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 391  HSILGEAVIKSCIETRTHYVDISAEIPQIFNAFRNNHNAAEEGNVLIVPSCGLASIPSAA 570
            H  L + V   C   R  Y+ +     ++ + +RN HN        I  S GL+    A 
Sbjct: 866  HERLLDFVSLFCFVPRAKYLPLGPTSAKLIDIYRNRHN--------ISTSSGLSDPAVAT 917

Query: 571  GLMFLQNQFKDIP 609
            G+  L  + KD+P
Sbjct: 918  GISDLMYEPKDVP 930


>10_08_0488 +
           18258178-18258228,18258864-18258926,18259006-18259143,
           18259355-18259462,18259691-18259777,18259911-18259961,
           18260058-18260129,18260323-18260442,18260695-18260742,
           18261060-18261239,18261365-18261454,18261619-18261951
          Length = 446

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 115 EKLDLLVLGATGFTGKSTVKFLTELTKEPEYH 210
           E++ + VLGA+G+TG   V+    L   P++H
Sbjct: 68  EEVQIAVLGASGYTGAEIVRL---LANHPQFH 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,082
Number of Sequences: 37544
Number of extensions: 287686
Number of successful extensions: 690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)