Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l21
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    27   0.17 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 271 LSELKIRTSSIVVIKCDISNQTEL 342
           + ELK +   +V ++CD+SNQ ++
Sbjct: 48  VEELKSKPGKLVPLQCDLSNQNDI 71


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 317 HFMTTMLDVLIFNSESSLSKMLSFFSDRP 231
           HF   M  + + N+E +L   +  FS+RP
Sbjct: 461 HFCRQMYAMKVNNAEYALLTAIVIFSERP 489


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 475 IFNAFRNNHNAAEEGNVLIVPSCGLASIPSA 567
           +FN    N+    + NVLI P+  +  +P A
Sbjct: 115 LFNNADGNYEVRYKSNVLIYPNGDVLWVPPA 145


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = -2

Query: 386 PVQFIKIFVLPVAFLNSV*LLMSHFMTTMLDVLIFNSESSLSKMLSFFSDRPAIP 222
           P+ ++   +LP   +NSV LL+ +  +   + +     + LS  +   + R ++P
Sbjct: 213 PMFYVFNLILPCILINSVALLVFYVPSESGEKVTLGISALLSMTVFLMTIRESLP 267


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 572 DSCSYKINSKIFLTSSTATSDSIYQ 646
           + CSY   +K  L S   +  ++YQ
Sbjct: 20  EKCSYSCVNKSMLNSHLKSHSNVYQ 44


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 257 MLSFFSDRPAIPHFTL 210
           +L ++SDRP + H  +
Sbjct: 132 ILHYYSDRPGLEHIVI 147


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 257 MLSFFSDRPAIPHFTL 210
           +L ++SDRP + H  +
Sbjct: 132 ILHYYSDRPGLEHIVI 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,481
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)