Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11l17
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 72 3e-14
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 57 1e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 2e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 52 4e-08
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 47 1e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 42 4e-05
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 32 0.046
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.24
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 26 3.0
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 5.2
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 24 9.1
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 72.1 bits (169), Expect = 3e-14
Identities = 34/90 (37%), Positives = 51/90 (56%)
Frame = +1
Query: 79 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 258
+ DS + K+ + + DKLVV+DF ATWCGPCK I PK ++ +
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61
Query: 259 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 348
A+E +++MP+F KNG+K++E GAN
Sbjct: 62 EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 56.8 bits (131), Expect = 1e-09
Identities = 28/91 (30%), Positives = 47/91 (51%)
Frame = +1
Query: 79 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 258
++ D TR++ DK+ V+DF A WCGPCK + P L+++ +E
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78
Query: 259 XXASEYNINSMPTFVFVKNGKKLDEFSGANV 351
A + + ++PT V + G++LD GA+V
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 56.0 bits (129), Expect = 2e-09
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 133 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 309
+ +D A WCGPCK I P ++A++ AS + +MPTFVF
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81
Query: 310 KNGKKLDEFSGAN 348
+NGK++D +GAN
Sbjct: 82 ENGKQIDMLTGAN 94
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 52.0 bits (119), Expect = 4e-08
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 124 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTF 300
DK++++ F A WCG CK + P+ + A E+ SEY+I PT
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98
Query: 301 VFVKNGKKLDEFSG 342
KNGK++ ++SG
Sbjct: 99 NVFKNGKQISQYSG 112
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 127 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 306
K V+++F A WCG CK + P +++A E S +I+ PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432
Query: 307 VKNGKKLD 330
K K++
Sbjct: 433 FKANDKVN 440
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 47.2 bits (107), Expect = 1e-06
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +1
Query: 67 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 246
MS+ I + + L +++++++F A W PCK + D+ A +
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59
Query: 247 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 348
A +++N++P FV + K L SGAN
Sbjct: 60 EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 41.9 bits (94), Expect = 4e-05
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +1
Query: 73 IHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXX 246
+ ++ ++L+ + A K +I+F ATWCG CK + P +E+ A E
Sbjct: 23 VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81
Query: 247 XXXXXXASEYNINSMPTFV-FVKNGKKLDEFSGA 345
A +Y+I PT + F +G + ++S A
Sbjct: 82 DTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115
Score = 30.3 bits (65), Expect = 0.14
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 127 KLVVIDFMATWCGPCKMIGPKLDEI 201
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 31.9 bits (69), Expect = 0.046
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Frame = +1
Query: 85 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX 264
+S + + + G LVV F A WCG CK + P ++A+ +
Sbjct: 37 NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94
Query: 265 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 348
A S+Y + PT V K S +
Sbjct: 95 AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.24
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 160 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLD 330
CG CK +GP D E A E +S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 331 E 333
E
Sbjct: 114 E 114
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 5 LSLSSRVPPVWKFVH-LSKNP 64
LS+S P WKF+H LSK P
Sbjct: 154 LSISRVKPEEWKFIHELSKQP 174
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 5.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 85 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA 207
+ D + RL EAG + +A CGPC + + D+IA+
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIAS 466
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 268 SEYNINSMPTFVFVKNGKKLD 330
S Y + P+F F+KNG K++
Sbjct: 175 SIYMLIGYPSFFFLKNGSKIE 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,915
Number of Sequences: 5004
Number of extensions: 26226
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -