Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l12
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical p...    29   3.7  

>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 558  ISNRFVICCETLT-SRF*NEPRPAIRSEYDFSHGNYFGI*ISQVIHYE 418
            + +++ +  E+L    F +  R A+R E D + G++ GI I  V+H E
Sbjct: 2067 VDDKYEVSFESLCWHNFEHNRRQAVRCEADSTDGSFSGIYIDSVVHEE 2114


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 558  ISNRFVICCETLT-SRF*NEPRPAIRSEYDFSHGNYFGI*ISQVIHYE 418
            + +++ +  E+L    F +  R A+R E D + G++ GI I  V+H E
Sbjct: 2067 VDDKYEVSFESLCWHNFEHNRRQAVRCEADSTDGSFSGIYIDSVVHEE 2114


>Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical
           protein AH6.14 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 195 QIYYGIETSCHLYRHPFRYTL*SNIQFTLSN 103
           QI+YGIE    LY+H F  +   NI  T SN
Sbjct: 70  QIFYGIEAITILYKHHFMTSDFCNIMQTESN 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,246
Number of Sequences: 27780
Number of extensions: 245688
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)