Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l12
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 574 LPKEHLAASPQKLTRETTE 630
           L KEH AA+ QKL +   E
Sbjct: 420 LAKEHKAAADQKLEKHLIE 438


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 225 WNHHETFLNPQIYYGIET 172
           WN ++   NP  Y G++T
Sbjct: 77  WNDYKLKWNPDDYGGVDT 94


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 225 WNHHETFLNPQIYYGIE 175
           WN ++   NP+ Y G+E
Sbjct: 90  WNDYKLKWNPEEYGGVE 106


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 314 VTYVFTLKVWLAG 352
           V YV  L VW+AG
Sbjct: 256 VAYVKALDVWMAG 268


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 300 WTWRENVICCG 268
           WTW +N  C G
Sbjct: 108 WTWAKNENCSG 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,722
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)