Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l10
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    30   0.36 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.5  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   5.9  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   5.9  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    26   5.9  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    26   5.9  

>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 144 VIREIASGASPFGALLAGFYRMIAQLNG*PGAAHHLLEPR 263
           +IR ++SG  P G +  GF R+ A L   PG    +  P+
Sbjct: 537 LIRVLSSGCPPHGGIALGFDRLAALLTNAPGIREVIAFPK 576


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 47  QDTQPAGFAAWLLSLWEKLSEVISGVIRG 133
           +++ P+G       LW+ +SE ISG ++G
Sbjct: 465 ENSTPSGTMVQFAELWQVMSEYISGFLKG 493


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 435 SAPERAPAGGQFVPSVHEVVGHPKILSRFELGL 337
           S P   P   + VP  +EV+ HP  LS  E  L
Sbjct: 365 SWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRL 397


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   PHYHPARRESGAVADRTRSLPASLPGSSP 89
           PH  PA   S     R+ SLP + P S P
Sbjct: 328 PHSLPASMPSSQPQSRSESLPLTHPNSEP 356


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 553 AYRPPGPDFVEDDIRRA 603
           A RPP P  V D IRRA
Sbjct: 127 AVRPPSPKMVVDSIRRA 143


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 477 LKLLVHHVPPDERRSAPERAPAGGQFVPSVHEVVGHPKILSRFE 346
           L +L H   PD+ R  PE A    Q +   ++V+  PK+  +++
Sbjct: 32  LAILYH---PDKNRENPEAAREKFQKLAEAYQVLSDPKLREKYD 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,520
Number of Sequences: 5004
Number of extensions: 61083
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)