Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11l10
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 32 0.37
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 31 0.65
04_03_0782 + 19600510-19600771,19601192-19601293,19601439-196015... 31 0.86
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 30 1.5
01_05_0657 + 24034198-24036306 30 2.0
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 29 2.6
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 29 4.6
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794... 28 6.1
12_01_1115 - 11904334-11904500,11905196-11905196,11905356-119055... 28 8.0
10_08_0423 + 17801221-17801416,17802239-17803212 28 8.0
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 8.0
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 28 8.0
>12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 399 VPSVHEVVGHPKILSRFELGLAQEDNLRVILPGESD*LRPSGPYPVG 259
VP+ + GH + FE GL + D ILPG GP+P+G
Sbjct: 907 VPTHLDGEGHQRGPRPFEGGLGRPDGFADILPGRPPLTNHPGPFPIG 953
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 519 DPHPD--RSGRGEGQ*LKLLVHHVPPDERRSAPERAPAGGQFVPSVHE 382
DPHP R +G G+ ++ ++PP+ ++AP R+ Q P+ E
Sbjct: 47 DPHPSPPRKNKGGGEDDEVDSDYIPPEPVKNAPRRSKRKAQAAPTERE 94
>04_03_0782 +
19600510-19600771,19601192-19601293,19601439-19601534,
19601625-19601717,19601814-19601893,19602000-19602281,
19602624-19602751,19603134-19603503
Length = 470
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 647 LRSPTTKAGWRSWFKARLISSSTKSGPGG 561
LR TT AG+R WF+ R + T+S GG
Sbjct: 402 LRLGTTAAGYRVWFEGRQVGGWTQSFGGG 430
>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = -2
Query: 513 HPDRSGRGEGQ*LKLLVHHVPPDERRSAPERAPAGGQFVPSVHEVVGHPKILSRFELGLA 334
H D Q LKLL VP R S P P VP+ R + LA
Sbjct: 790 HNDNINLNIQQDLKLLSDKVPKRNRSSHPTSKPLVSSKVPTEDRTTSAMPAKKRKQKNLA 849
Query: 333 QEDNLR---VILPGES 295
E NL+ VIL ES
Sbjct: 850 TESNLKTKAVILSPES 865
>01_05_0657 + 24034198-24036306
Length = 702
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 474 KLLVHHVPPDERRSAPERAPAGGQFVPSVHEVVGHPKILSRFELGLAQEDNL 319
+++++ P D+ R E GG+F+ + ++ H IL R G Q N+
Sbjct: 651 EMVLYLAPSDDARERLETLTRGGEFITHLWALLTHGGILERSTTGAGQCQNV 702
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 335 ARPSSNLDKILGCPTTSCTDGTN*PPAGARSGALRRSS 448
A+ + ++++ G P S DG PP A +GA++ +S
Sbjct: 461 AKLKAEIERLRGTPGKSAADGIASPPCSASAGAMQTNS 498
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 3 PHYHPARRESGAVADRTR 56
PHY+PA +E GA D TR
Sbjct: 179 PHYNPAGKEHGAPEDETR 196
>12_02_0580 +
20776820-20777247,20777341-20778109,20779280-20779447,
20779877-20780236
Length = 574
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 289 LIRLAREYDPQVILLGETKLKPRQDFRMPDY 381
L ++ E+DP I +++ + DF MPDY
Sbjct: 510 LEKITMEFDPSYIFENPKEVRDKIDFDMPDY 540
>12_01_1115 -
11904334-11904500,11905196-11905196,11905356-11905508,
11905559-11905969
Length = 243
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +2
Query: 317 RRLSSWARPSSNLDKILGCPTTSCTDGTN*PPAGARSGALRRSSGGTWCTRSLSY*PSPL 496
RR S RP L G SC D ++ G RSG L S ++ ++ P
Sbjct: 38 RREQSIRRPLPLLHGSHGLSAPSCADPSSAAMGGVRSGDLFLSRSDPVVSQRPAH-ADPW 96
Query: 497 PERSG*GSTYRGPNCG 544
P +G GS G +CG
Sbjct: 97 PATTG-GSRSGGVHCG 111
>10_08_0423 + 17801221-17801416,17802239-17803212
Length = 389
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 508 GVRVHVPGAELRIYAAYRPPGPDFVEDDIRRALNHDRHPALVVG 639
G RV V AE + +RPP PD D + AL D A ++G
Sbjct: 189 GSRVLVVAAETTVLG-FRPPSPDRPYDLVGAALFGDGASAAIIG 231
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 226 PLSCAIIR*NPASKAPKGLAPEAISRITPE 137
PLS A R NPA+ AP AP + S + E
Sbjct: 587 PLSAARSRNNPAAPAPTNAAPSSSSTLPSE 616
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 215 RNHPVEPREQGPEGTGSRGDLSDYSGDHLGSLRRSPR 105
R+HP P G G G DL D S +HL ++ SPR
Sbjct: 50 RSHPSVPTPTGGGGAGEAADL-DPSDEHLATM--SPR 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,538,725
Number of Sequences: 37544
Number of extensions: 569314
Number of successful extensions: 1910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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