Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11l10
(691 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 81 2e-15
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 79 6e-15
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 71 2e-12
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 65 1e-10
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 62 9e-10
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 62 9e-10
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 58 1e-08
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 56 5e-08
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 51 1e-06
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 50 4e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 49 5e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 49 5e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 49 5e-06
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 48 1e-05
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 48 1e-05
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 48 1e-05
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 47 2e-05
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 46 4e-05
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 43 3e-04
AJ564684-1|CAD92836.1| 159|Drosophila melanogaster pol protein ... 41 0.001
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 38 0.010
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 32 0.84
AE013599-1980|AAF58184.1| 518|Drosophila melanogaster CG17453-P... 30 3.4
BT014632-1|AAT27256.1| 2112|Drosophila melanogaster SD12316p pro... 29 7.9
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 80.6 bits (190), Expect = 2e-15
Identities = 44/150 (29%), Positives = 66/150 (44%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDELTSSG 417
LRI W+ +G+ EL + E + V+LL ET L + +F +P Y Y + G
Sbjct: 4 LRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNH--PDG 61
Query: 418 RPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIR 597
+ GT L+R + H L ++ + + + + A Y PP ED
Sbjct: 62 KAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFM 121
Query: 598 RALNHDRHPALVVGDLNAKHVAWGSRIITP 687
N + GD NAKH WGSR++TP
Sbjct: 122 EFFNTLGDRFIAAGDYNAKHTHWGSRLVTP 151
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 79.0 bits (186), Expect = 6e-15
Identities = 43/150 (28%), Positives = 66/150 (44%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDELTSSG 417
LRI W+ +G+ EL + E + V+LL ET L + +F +P Y Y + G
Sbjct: 4 LRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNH--PDG 61
Query: 418 RPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIR 597
+ GT L+R + H L ++ + + + + A Y PP ED
Sbjct: 62 KAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFM 121
Query: 598 RALNHDRHPALVVGDLNAKHVAWGSRIITP 687
N + GD NAKH WGSR+++P
Sbjct: 122 EFFNTLGDRFIAAGDYNAKHTHWGSRLVSP 151
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 70.5 bits (165), Expect = 2e-12
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDELTSSG 417
LRI W+ +G+ R+ EL + E V+LL ET L + +F++ DY Y + G
Sbjct: 4 LRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNH--PDG 61
Query: 418 RPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAA-YRPPGPDFVEDDI 594
+ GTA L+R + H + + + + + L AA Y PP +E
Sbjct: 62 KAHGGTAILIRNRMKHHFYKEFAENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEAQF 121
Query: 595 RRALNHDRHPALVVGDLNAKHVAWGSRIITP 687
+ GD NAKH WGSR++ P
Sbjct: 122 LDFFQALGPHFIAAGDYNAKHTHWGSRLVNP 152
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 64.9 bits (151), Expect = 1e-10
Identities = 37/145 (25%), Positives = 65/145 (44%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDELTSSG 417
LRI+ W+ DG+ ++ E+ R ++ V+LL ET K + ++ + Y ++ S G
Sbjct: 4 LRILVWNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTAND-PSGG 62
Query: 418 RPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIR 597
G A L++ + H L + A + + + A Y PP + D+ +
Sbjct: 63 NAKGGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAWTTDEFK 122
Query: 598 RALNHDRHPALVVGDLNAKHVAWGS 672
L + +V GD NA H WG+
Sbjct: 123 DILEEFQTKFIVAGDWNASHWLWGA 147
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 61.7 bits (143), Expect = 9e-10
Identities = 37/150 (24%), Positives = 64/150 (42%)
Frame = +1
Query: 223 MASQELRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDE 402
M L+I W+ G+ EL ++D V+L ET ++ Q +P Y +Y
Sbjct: 1 MTQPTLKIGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHH 60
Query: 403 LTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFV 582
SG G+A +++ + H L ++ + V + + + A Y PP ++
Sbjct: 61 --PSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWI 118
Query: 583 EDDIRRALNHDRHPALVVGDLNAKHVAWGS 672
DD + + + GD NAKH WG+
Sbjct: 119 VDDFKSMFAALGNKFIAGGDYNAKHAWWGN 148
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 61.7 bits (143), Expect = 9e-10
Identities = 37/150 (24%), Positives = 64/150 (42%)
Frame = +1
Query: 223 MASQELRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDE 402
M L+I W+ G+ EL ++D V+L ET ++ Q +P Y +Y
Sbjct: 1 MTQPTLKIGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHH 60
Query: 403 LTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFV 582
SG G+A +++ + H L ++ + V + + + A Y PP ++
Sbjct: 61 --PSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWI 118
Query: 583 EDDIRRALNHDRHPALVVGDLNAKHVAWGS 672
DD + + + GD NAKH WG+
Sbjct: 119 VDDFKSMFAALGNKFIAGGDYNAKHAWWGN 148
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 57.6 bits (133), Expect = 1e-08
Identities = 36/145 (24%), Positives = 62/145 (42%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDELTSSG 417
L II W+ G + S L+ L ++Y P +I L ET ++ + P + + T+
Sbjct: 3 LTIIQWNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNR- 61
Query: 418 RPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIR 597
F G LV + + H L + + + + +L I++ Y P + +
Sbjct: 62 --FGGVRLLVHKSIQHTVLNITIDIEAIAINIESKL---KLNIFSTYISPTKNITNQTLH 116
Query: 598 RALNHDRHPALVVGDLNAKHVAWGS 672
N + P+L+ GD N H WGS
Sbjct: 117 NTFNIQQTPSLITGDFNGWHHPWGS 141
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 56.0 bits (129), Expect = 5e-08
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDELTSSG 417
L I+ W+ + ++R ELI+ + L+ ET L F +P+Y +YR D S G
Sbjct: 12 LNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIYRNDRKESRG 71
Query: 418 RPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHV-PGAELRIYAAY 558
G A V ++HE++ + VG++++ + L+IY+ Y
Sbjct: 72 ---GGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIYSIY 116
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 51.2 bits (117), Expect = 1e-06
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 1/146 (0%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQ-DFRMPDYFVYRRDELTSS 414
+ I+ W+ GI + +EL L +++ P ++ L ETKL +F P + + +
Sbjct: 3 ITILQWNIHGIFNNYNELTLLIKDHAPDIVFLQETKLPCNSTNFICPKEYSGYFHNFSYN 62
Query: 415 GRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDI 594
+G L++R+V H + + + + + I AY PP F DI
Sbjct: 63 TSAKQGIGVLIKRNVPHTYRNINSSILCSALQLNFE---QVINIVNAYIPPSQIFSSSDI 119
Query: 595 RRALNHDRHPALVVGDLNAKHVAWGS 672
L + +++GDLN+ WGS
Sbjct: 120 SEILQNLNGSTILLGDLNSWSPLWGS 145
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 49.6 bits (113), Expect = 4e-06
Identities = 34/150 (22%), Positives = 60/150 (40%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQDFRMPDYFVYRRDELTSSG 417
L+I+ W+ +GI + ++ A ++L+ E +LK + ++ Y Y + +
Sbjct: 4 LKILIWNANGISRKAKDVELFAHNKKVDILLVTELRLKRGETVKIYGYAYYPAYRPSLNN 63
Query: 418 RPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIR 597
G A VR + H ++ + V+V +L+ A Y P E
Sbjct: 64 NSVGGVAVFVRTTLRHFPQRVIETRHIQLSSVKVATGLGDLQFSAIYCSPSTRIEERHFT 123
Query: 598 RALNHDRHPALVVGDLNAKHVAWGSRIITP 687
+ LV GD NA+H WG +P
Sbjct: 124 DIIRACGQRYLVGGDWNARHWLWGDTCNSP 153
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 5e-06
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Frame = +1
Query: 211 LRSSMASQELRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQD-FRMPDYFV 387
L + AS L+I YW+ GI ++ +EL ++ Q++L+ ET+L+ + + +
Sbjct: 5 LNNGQASNTLKIGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHT 64
Query: 388 YRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYA 552
Y TS + GTA +V +++ H L + ++ + + +P + +R +
Sbjct: 65 YLAQNPTSHRK--GGTATIVSQNIRHACLNPIETDFMQSAPIAL-IPSSRIRADMTIVAP 121
Query: 553 AYRPPGPDFVEDDIRRALNH------DRHPALVVGDLNAKHVAWGS 672
Y PP + + + NH + ++ GD N KH WG+
Sbjct: 122 IYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKHRLWGN 167
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 5e-06
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Frame = +1
Query: 211 LRSSMASQELRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQD-FRMPDYFV 387
L + AS L+I YW+ GI ++ +EL ++ Q++L+ ET+L+ + + +
Sbjct: 5 LNNGQASNTLKIGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHT 64
Query: 388 YRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYA 552
Y TS + GTA +V +++ H L + ++ + + +P + +R +
Sbjct: 65 YLAQNPTSHRK--GGTATIVSQNIRHACLNPIETDFMQSAPIAL-IPSSRIRADMTIVAP 121
Query: 553 AYRPPGPDFVEDDIRRALNH------DRHPALVVGDLNAKHVAWGS 672
Y PP + + + NH + ++ GD N KH WG+
Sbjct: 122 IYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKHRLWGN 167
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 5e-06
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Frame = +1
Query: 211 LRSSMASQELRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQD-FRMPDYFV 387
L + AS L+I YW+ GI ++ +EL ++ Q++L+ ET+L+ + + +
Sbjct: 5 LNNGQASNTLKIGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSNALNIKGFHT 64
Query: 388 YRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYA 552
Y TS + GTA +V +++ H L + ++ + + +P + +R +
Sbjct: 65 YLAQNPTSHRK--GGTATIVSQNIRHACLNPIETDFMQSAPIAL-IPSSRIRADMTIVAP 121
Query: 553 AYRPPGPDFVEDDIRRALNH------DRHPALVVGDLNAKHVAWGS 672
Y PP + + + NH + ++ GD N KH WG+
Sbjct: 122 IYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKHRLWGN 167
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 48.0 bits (109), Expect = 1e-05
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQ-DFRMPDYFVYRRDELTSS 414
L+I +W+ GI ++ EL D ++++ ET+L + +P YF Y SS
Sbjct: 10 LKIAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSS 69
Query: 415 GRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYAAYRPPGPDF 579
R G A +V + H LE + ++ + V +P R I + Y PP +
Sbjct: 70 KR--GGVATIVNSSIRHMALEPIEKECIQSAPI-VLLPENNRRSEMIVIASVYCPPSLSW 126
Query: 580 VEDDIRRALNH------DRHPALVVGDLNAKHVAWG 669
LN + ++ GD NAKH WG
Sbjct: 127 SPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 48.0 bits (109), Expect = 1e-05
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQ-DFRMPDYFVYRRDELTSS 414
L+I +W+ GI ++ EL D ++++ ET+L + +P YF Y SS
Sbjct: 10 LKIAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSS 69
Query: 415 GRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYAAYRPPGPDF 579
R G A +V + H LE + ++ + V +P R I + Y PP +
Sbjct: 70 KR--GGVATIVNSSIRHMALEPIEKECIQSAPI-VLLPENNRRSEMIVIASVYCPPSLSW 126
Query: 580 VEDDIRRALNH------DRHPALVVGDLNAKHVAWG 669
LN + ++ GD NAKH WG
Sbjct: 127 SPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 48.0 bits (109), Expect = 1e-05
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQ-DFRMPDYFVYRRDELTSS 414
L+I +W+ GI ++ EL D ++++ ET+L + +P YF Y SS
Sbjct: 10 LKIAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPVSS 69
Query: 415 GRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYAAYRPPGPDF 579
R G A +V + H LE + ++ + V +P R I + Y PP +
Sbjct: 70 KR--GGVATIVNSSIRHMALEPIEKECIQSAPI-VLLPENNRRSEMIVIASVYCPPSLSW 126
Query: 580 VEDDIRRALNH------DRHPALVVGDLNAKHVAWG 669
LN + ++ GD NAKH WG
Sbjct: 127 SPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 47.2 bits (107), Expect = 2e-05
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 12/156 (7%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQ-DFRMPDYFVYRRDELTSS 414
L+I +W+ GI ++ EL D +I++ ET+L +P YF Y SS
Sbjct: 22 LKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPASS 81
Query: 415 GRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYAAYRPPGPDF 579
R G A +V + H LE + ++ + V +P R I + Y PP +
Sbjct: 82 KR--GGVATIVNSSLRHMALEPIEKECIQSAPI-VLLPENNRRSEMIVIASVYCPPSLSW 138
Query: 580 VEDDIRRALNH------DRHPALVVGDLNAKHVAWG 669
LN + ++ GD NAKH WG
Sbjct: 139 SPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWG 174
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 46.4 bits (105), Expect = 4e-05
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Frame = +1
Query: 238 LRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKLKPRQ-DFRMPDYFVYRRDELTSS 414
L+I +W+ GI ++ EL D +I++ ET+L +P YF Y SS
Sbjct: 10 LKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPVSS 69
Query: 415 GRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYAAYRPPGPDF 579
R G A +V + H L+ + ++ + V +P R I + Y PP +
Sbjct: 70 KR--GGVATIVNSSIRHMALKPIEKECIQSAPI-VLLPENNRRSEMIVIASVYCPPSLRW 126
Query: 580 VEDDIRRALNH------DRHPALVVGDLNAKHVAWG 669
+ LN + ++ GD NAKH WG
Sbjct: 127 LPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWG 162
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 43.2 bits (97), Expect = 3e-04
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 538 LRIYAAYRPPG--PDFVEDDIRRALNH--DRHPALVVGDLNAKHVAWGSRI 678
+ Y+ Y PP P+ ED + + +NH R P ++ GDLNA WGSRI
Sbjct: 87 IHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRI 137
>AJ564684-1|CAD92836.1| 159|Drosophila melanogaster pol protein
protein.
Length = 159
Score = 41.1 bits (92), Expect = 0.001
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Frame = +1
Query: 211 LRSSMASQELRIIYWSPDGIGSRRSELIRLAREYDPQVILLGETKL-KPRQDFRMPDYFV 387
L + AS L+I YW+ GI ++ +EL ++ Q++L+ ET+L + + + +
Sbjct: 5 LNNGQASNTLKIGYWNSCGITNKTNELEAYIKKEGIQIMLVTETRLERNSKALNIKGFHT 64
Query: 388 YRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELR-----IYA 552
Y TS + GTA +V +++ H L + ++ + + +P + +R +
Sbjct: 65 YLAQNPTSHRK--GGTATIVNQNIRHTCLNPIETDFMQSAPIAL-IPSSRIRADMTIVAP 121
Query: 553 AYRPPGPDFVEDDIRRALNH 612
Y PP + + + NH
Sbjct: 122 IYCPPVYKWTTEQFSKLFNH 141
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 38.3 bits (85), Expect = 0.010
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 364 FRMPDYFVYRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHV-PGAEL 540
F +P+Y +YR D S G G A V ++HE++ + VG++++ + L
Sbjct: 2 FNIPEYTIYRNDRKESRG---GGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSL 58
Query: 541 RIYAAY 558
+IY+ Y
Sbjct: 59 KIYSIY 64
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.84
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 12/127 (9%)
Frame = +1
Query: 325 ILLGETKLKPRQD-FRMPDYFVYRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTR 501
+++ ET+L + +P YF Y SS R G A +V + H LE + +
Sbjct: 1 VIVTETRLDNKSTKLELPGYFTYLAQNPVSSKRG--GVATIVNSSIRHMALEPIEKECIQ 58
Query: 502 TVGVRVHVPGAELR-----IYAAYRPPGPDFVEDDIRRALNHDRHPA------LVVGDLN 648
+ + V +P R I + Y PP + LN ++ GD N
Sbjct: 59 SAPI-VLLPENNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWN 117
Query: 649 AKHVAWG 669
AKH WG
Sbjct: 118 AKHRQWG 124
>AE013599-1980|AAF58184.1| 518|Drosophila melanogaster CG17453-PA
protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 530 GPNCGFMPRIDPRVLILSRTILDGP*TMIAIRPWWS 637
GP CGF + PR LIL R ++ I I+ +W+
Sbjct: 76 GPFCGFYALLQPRALILDRELI----RQIMIKDFWN 107
>BT014632-1|AAT27256.1| 2112|Drosophila melanogaster SD12316p protein.
Length = 2112
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 36 AVADRTRSLPASLPGSSPCGRNCPR*SPE*SEVISGVIREIASGASPFGALLAG 197
A A+ T +LPAS GSS N P+ + S G + +AS A P G + G
Sbjct: 2022 AGAEATVALPASSSGSSSNNNNSPQ--SDGSNGNGGGVAGVASNAPPTGVGVGG 2073
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,469,994
Number of Sequences: 53049
Number of extensions: 868624
Number of successful extensions: 2246
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2233
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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