Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l10
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   2.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   2.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 448  RRDVVHEELELLTFASTRTVGVRVHVPG 531
            R++++ E    +  A +  V VRVHVPG
Sbjct: 1174 RQEMMREAGRGIESAKSYVVDVRVHVPG 1201



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 381 VVGHPKILSRFELGLAQEDNLRV 313
           ++G PKILS FE  L  +  + V
Sbjct: 639 MIGEPKILSVFEPYLEGKQQMTV 661


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 564 GSIRGINPQFGPRYVDPHPDRSGRGE 487
           G  R  +P      VD HP+R  RG+
Sbjct: 373 GDARIFSPHEENESVDKHPNRRARGQ 398


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 337 ETKLKPRQDFRMPDYFVYRRDELTSSGR 420
           + ++ P+  +   D++   R ELT+SG+
Sbjct: 19  KNEMYPKDPYLYYDFYPLERGELTNSGK 46


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 337 ETKLKPRQDFRMPDYFVYRRDELTSSGR 420
           + ++ P+  +   D++   R ELT+SG+
Sbjct: 34  KNEMYPKDPYLYYDFYPLERGELTNSGK 61


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  HAACRLRCLAPLPVGETVR 108
           H+AC +RCLA    G + R
Sbjct: 78  HSACAIRCLAQRRKGGSCR 96


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 230 LAIELRNHPVEPREQGPEGTGSR 162
           LA +++N  V P+E+ P+G   R
Sbjct: 210 LADQIKNGIVSPQEERPKGINGR 232


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 230 LAIELRNHPVEPREQGPEGTGSR 162
           LA +++N  V P+E+ P+G   R
Sbjct: 205 LADQIKNGIVSPQEERPKGINGR 227


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 562 PPGPDFVEDDIRRALNHDR 618
           PPGP   +    RALN DR
Sbjct: 385 PPGPTPAQKARMRALNIDR 403


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 423 RAPAGGQFVPS 391
           R+PAGGQ  PS
Sbjct: 402 RSPAGGQLPPS 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,716
Number of Sequences: 438
Number of extensions: 4670
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)