Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l06
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.4  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   9.4  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 128 NVIGISFKLWNFGFSLCYSTIFSRFPIKK 42
           N +G SF L    FSL  ST+  +FP+ K
Sbjct: 90  NWVGTSFYLGFMVFSLPLSTLLQKFPLSK 118


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 SRICKCTQASSLNKKRHHCW 243
           S + KC  ASS++ K   CW
Sbjct: 60  SALLKCGYASSIDPKSQFCW 79


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 336 TGCVPSL*SLGWHHPN 289
           TGC  SL S  WH PN
Sbjct: 140 TGCGSSLKSASWHIPN 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,806
Number of Sequences: 5004
Number of extensions: 42602
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)