Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l06
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317...    30   1.4  
01_06_1124 - 34679205-34680926,34681438-34682811                       29   4.2  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   4.2  
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409...    28   5.6  
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022...    28   5.6  

>02_03_0065 -
           14629676-14629804,14631119-14631247,14631383-14631736,
           14631817-14632063,14632155-14632231,14632574-14632648,
           14632721-14632822,14632966-14633084,14633538-14633627,
           14634866-14635022,14635085-14635098,14635425-14635548,
           14635628-14635678,14635793-14635891,14636962-14637072
          Length = 625

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 36  KSFFNGKPRKYSRVTQTEPKIPQLKGDPNYIEISPTWGTDIK 161
           K  F GK   Y ++  TE K+P  K       ++P W  D K
Sbjct: 361 KKDFLGKSDPYVKLKLTEEKLPSKKTSVKRSNLNPEWNEDFK 402


>01_06_1124 - 34679205-34680926,34681438-34682811
          Length = 1031

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 285 DHWDDAIQGFRETERSQFKPENQVILDRVKALA 383
           +H+ DA++ FR+ +R++ KP+  VI   V + A
Sbjct: 764 NHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 796


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 90  PKIPQ--LKGDPNYIEISPTWGTDIKPELRAAVLQDMQVY 203
           P +P   ++G P +++  P     + PELRA +L  ++ Y
Sbjct: 300 PAVPMEPMRGPPRFVQNQPPPHPVLSPELRAKILTQVEYY 339


>12_01_0518 -
           4093206-4094955,4095357-4095810,4095966-4096236,
           4096308-4096628
          Length = 931

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 358 MTWFSGLNWLRSVSLKPW 305
           M W    +WLR V LKPW
Sbjct: 742 MLWLVANSWLRVVELKPW 759


>01_06_1149 -
           34901338-34901466,34901707-34901838,34901940-34902290,
           34902301-34902619,34902756-34902784,34903641-34903715,
           34903799-34903900,34904002-34904120,34904752-34904875,
           34904976-34905026,34905143-34905241,34905751-34905861
          Length = 546

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 51  GKPRKYSRVTQTEPKIPQLKGDPNYIEISPTWGTDIKPELRAAVLQDMQV 200
           GK   Y ++T ++ K+P  K       ++P W  D K  +     Q++++
Sbjct: 263 GKSDPYVKLTMSDDKLPSKKTTVKRGNLNPEWNEDFKFVVTDPETQELEI 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,976,958
Number of Sequences: 37544
Number of extensions: 293888
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)