Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l06
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004393-1|AAH04393.1|  221|Homo sapiens alkB, alkylation repair...   134   2e-31
AY427650-1|AAR24624.1|  221|Homo sapiens spermatogenesis cell pr...   134   2e-31
AY358858-1|AAQ89217.1|  221|Homo sapiens AGTG6002 protein.            134   2e-31
AK223336-1|BAD97056.1|  221|Homo sapiens spermatogenesis associa...   132   1e-30
X53002-1|CAA37188.1|  799|Homo sapiens protein ( Human mRNA for ...    31   4.7  
M35011-1|AAA52707.1|  796|Homo sapiens ITGB5 protein.                  31   4.7  
J05633-1|AAA59183.1|  799|Homo sapiens ITGB5 protein.                  31   4.7  
BC006541-1|AAH06541.1|  799|Homo sapiens integrin, beta 5 protein.     31   4.7  

>BC004393-1|AAH04393.1|  221|Homo sapiens alkB, alkylation repair
           homolog 7 (E. coli) protein.
          Length = 221

 Score =  134 bits (325), Expect = 2e-31
 Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +3

Query: 138 PTWGTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 317
           P+W     P + + +     V PGF++            P L+R RYE+DHWD AI GFR
Sbjct: 15  PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74

Query: 318 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 491
           ETE+S++   ++ IL RV+A AF      L  VHVLDL A G+IKPH+D+++FCG  IAG
Sbjct: 75  ETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134

Query: 492 VCLCSSAVMRXXXXXXXXXXXXXXXXXXXXYVMKGVARYEFTHAVLGGERS 644
           + L S +VMR                    Y+++G ARY+F+H +L  E S
Sbjct: 135 LSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185


>AY427650-1|AAR24624.1|  221|Homo sapiens spermatogenesis cell
           proliferation related protein protein.
          Length = 221

 Score =  134 bits (325), Expect = 2e-31
 Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +3

Query: 138 PTWGTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 317
           P+W     P + + +     V PGF++            P L+R RYE+DHWD AI GFR
Sbjct: 15  PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74

Query: 318 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 491
           ETE+S++   ++ IL RV+A AF      L  VHVLDL A G+IKPH+D+++FCG  IAG
Sbjct: 75  ETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134

Query: 492 VCLCSSAVMRXXXXXXXXXXXXXXXXXXXXYVMKGVARYEFTHAVLGGERS 644
           + L S +VMR                    Y+++G ARY+F+H +L  E S
Sbjct: 135 LSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185


>AY358858-1|AAQ89217.1|  221|Homo sapiens AGTG6002 protein.
          Length = 221

 Score =  134 bits (325), Expect = 2e-31
 Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +3

Query: 138 PTWGTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 317
           P+W     P + + +     V PGF++            P L+R RYE+DHWD AI GFR
Sbjct: 15  PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74

Query: 318 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 491
           ETE+S++   ++ IL RV+A AF      L  VHVLDL A G+IKPH+D+++FCG  IAG
Sbjct: 75  ETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134

Query: 492 VCLCSSAVMRXXXXXXXXXXXXXXXXXXXXYVMKGVARYEFTHAVLGGERS 644
           + L S +VMR                    Y+++G ARY+F+H +L  E S
Sbjct: 135 LSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185


>AK223336-1|BAD97056.1|  221|Homo sapiens spermatogenesis associated
           11 variant protein.
          Length = 221

 Score =  132 bits (318), Expect = 1e-30
 Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 2/171 (1%)
 Frame = +3

Query: 138 PTWGTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 317
           P+W     P + + +     V PGF++            P L+R RYE+DHWD AI GFR
Sbjct: 15  PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74

Query: 318 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 491
           ETE+S++   ++ I  RV+A AF      L  VHVLDL A G+IKPH+D+++FCG  IAG
Sbjct: 75  ETEKSRWSEASRAIPQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134

Query: 492 VCLCSSAVMRXXXXXXXXXXXXXXXXXXXXYVMKGVARYEFTHAVLGGERS 644
           + L S +VMR                    Y+++G ARY+F+H +L  E S
Sbjct: 135 LSLLSPSVMRLVHTQEPGEWLELLLEPGSLYILRGSARYDFSHEILRDEES 185


>X53002-1|CAA37188.1|  799|Homo sapiens protein ( Human mRNA for
           integrin beta-5 subunit. ).
          Length = 799

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 363 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 452
           D +  L FTTD +PH+  LD    G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296


>M35011-1|AAA52707.1|  796|Homo sapiens ITGB5 protein.
          Length = 796

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 363 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 452
           D +  L FTTD +PH+  LD    G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296


>J05633-1|AAA59183.1|  799|Homo sapiens ITGB5 protein.
          Length = 799

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 363 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 452
           D +  L FTTD +PH+  LD    G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296


>BC006541-1|AAH06541.1|  799|Homo sapiens integrin, beta 5 protein.
          Length = 799

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 363 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 452
           D +  L FTTD +PH+  LD    G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,691,867
Number of Sequences: 237096
Number of extensions: 1582902
Number of successful extensions: 3350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3336
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)