Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l06
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical...   118   3e-27
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical
           protein Y46G5A.35 protein.
          Length = 227

 Score =  118 bits (285), Expect = 3e-27
 Identities = 60/148 (40%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
 Frame = +3

Query: 210 FVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFRETERSQFKPENQVILDRVKALAF- 386
           F+T            P++KR+RYE  HWDDAI  +RE E+ +++ EN  ++ R+++ +F 
Sbjct: 38  FITEAEEKSLLVDVEPHMKRLRYEKSHWDDAIHLYREREQRKWRDENLEVISRIRSESFG 97

Query: 387 -TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCSSAVMR-XXXXXXXXXXXXX 560
             T+ L +VH+LDL   G IKPHIDA+R+CGDVI GV L S A+MR              
Sbjct: 98  ANTEHLTYVHILDLHKDGVIKPHIDAIRYCGDVITGVSLLSDAIMRLRHKDQKDELIMDL 157

Query: 561 XXXXXXXYVMKGVARYEFTHAVLGGERS 644
                  Y + G  RY+FTH VLG + S
Sbjct: 158 LMPRRSLYRLGGPGRYDFTHEVLGEQES 185


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 517 MTALEHRHTPAITSPQNRTASICGFMNPAAARSKTCTCGSVS 392
           ++AL  +  P+ T PQ+RT  I G  +P         C SVS
Sbjct: 267 LSALLSQRRPSPTVPQSRTEHISGLNSPPRHTGNKSDCESVS 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,024,795
Number of Sequences: 27780
Number of extensions: 235637
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)