Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l06
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
 Frame = +1

Query: 382  PSQPTHYRTCT---------SWTWPPLGS*SRILT 459
            P QP H  TCT         SW  PPL + + ++T
Sbjct: 1081 PEQPPHDTTCTTLTSQTIRISWMSPPLSAANGVIT 1115



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 85  LNPKFHNLKEIPITLRSLQRGAQISSLSYELPY 183
           +N     + E+P  L+ L +  +   LS+  PY
Sbjct: 868 INMIVQEVPEVPYGLKVLDKSGRSVQLSWAAPY 900


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 109 LSCGILGSVCVTLLY 65
           L CGILGS+ V   Y
Sbjct: 369 LVCGILGSILVPFFY 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,460
Number of Sequences: 438
Number of extensions: 3118
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)