Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l05
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       30   0.67 
07_03_1662 + 28447419-28447666,28448429-28448573                       29   1.5  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +2

Query: 284 DWLRVVASAHD--AYELRYF 337
           DWLRV+AS  D   YELRYF
Sbjct: 101 DWLRVIASNKDRNVYELRYF 120


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +2

Query: 284 DWLRVVASAHD--AYELRYF 337
           DWLRV+A+  D   YELRYF
Sbjct: 100 DWLRVIAANKDRNVYELRYF 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,180,212
Number of Sequences: 37544
Number of extensions: 144251
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)