Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l05
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    31   0.34 
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   7.3  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 218 IPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 337
           +PFS                  DWLRVVA   + YE+RYF
Sbjct: 78  VPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 162 NLKFTIDCTHPAEDSIL 212
           +LKF ++C +P ED IL
Sbjct: 20  HLKFNVECKNPVEDGIL 36


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 162 NLKFTIDCTHPAEDSIL 212
           +LKF ++C +P ED IL
Sbjct: 20  HLKFNVECKNPVEDGIL 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,024,400
Number of Sequences: 27780
Number of extensions: 130041
Number of successful extensions: 275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)