Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11l05
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   5.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   10.0 

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 35  VFVCHNGSN 61
           VFVCHNG N
Sbjct: 805 VFVCHNGMN 813


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 240 RYLFEKGMCLRYYPQR 193
           R  +E   C+RYYP+R
Sbjct: 712 RLHYETDPCVRYYPRR 727


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 116 SFFASLLMQLGFFSHRFLCYCH 51
           S + S+L  + F   R+L  CH
Sbjct: 124 SSYVSVLTIVAFSMERYLAICH 145


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 177 IDCTHPAEDSILDTFLFQRGT 239
           IDC++      L T L QRGT
Sbjct: 325 IDCSNHIGRGKLVTALIQRGT 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,879
Number of Sequences: 438
Number of extensions: 1530
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)