Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11l03
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 159 3e-40
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 34 0.015
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.57
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 26 5.3
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 5.3
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 7.1
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 7.1
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 9.3
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 159 bits (386), Expect = 3e-40
Identities = 73/122 (59%), Positives = 100/122 (81%)
Frame = +3
Query: 159 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 338
MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1 MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60
Query: 339 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 518
KG++ GK+ VYRKKF++ IER+ REKANGA+A VGI SK VI KL ++KDRK ++
Sbjct: 61 SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119
Query: 519 RR 524
R+
Sbjct: 120 RK 121
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 34.3 bits (75), Expect = 0.015
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +2
Query: 44 KGSKNISRQFDILHARNSNLNKVL*INVVFLRCSEERQNEVQQAGDFLKKEKQEEAFQCS 223
KG+ N + F++ +ARN N+NK+ ++ E+ + +G+ L K+++E S
Sbjct: 179 KGNVNDANFFEVEYARNENMNKLSSSELISDDLLEDEIMKPLSSGESLPKKEEEVTKSPS 238
Query: 224 FTYKASV 244
FT SV
Sbjct: 239 FTLDDSV 245
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.57
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 446 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 297
+ C +I LFS PL+ N+ F I+L F+ L ++ST + F F RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 328 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 414
LY D + A+ C C+V++LLY R F
Sbjct: 78 LYHDNHERKMSAQSCACMVRTLLYGKRFF 106
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 114 STLFRLLFRACKMSNCRDMFFEPFHQ 37
STL+RLLF KM C E F Q
Sbjct: 45 STLWRLLFELQKMIECEPSCVEYFRQ 70
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.1
Identities = 26/100 (26%), Positives = 43/100 (43%)
Frame = +3
Query: 138 VAAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 317
V+A ++ K + TSS ++ P H+ R L SSP S++ + S K
Sbjct: 231 VSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQ 290
Query: 318 EVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGA 437
+ + + K ++ RK RI +EKA+GA
Sbjct: 291 PSKSEKTSSMSVSI-KPPKIIRKGSKEQ-NRIAKEKASGA 328
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 447 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 569
+GI P K +K + KDR A ++RR +G +G D+ Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 569 VFTLVFAKCSQSALCSAIEDCFAVFIH 489
+F LV S +C IED F IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 AAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFN 287
A K+D K V S R+K HF+ + + R+ S S+ ++FN
Sbjct: 262 AIKADLAKLFNLVESQRQKMDSLHFALTNALERLNDISSTSQFPSERFN 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,094
Number of Sequences: 5004
Number of extensions: 56550
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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