Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k24
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    29   0.16 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   0.85 
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   3.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   3.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   3.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   4.5  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   7.9  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    24   7.9  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 268 WNSIVYLEIDYENAEILSQNCVXENL 191
           W +I+  +  Y+NAE + +NC+  NL
Sbjct: 21  WQAILNYKYIYQNAEAVQRNCINRNL 46


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 181 CIMCRAIVRDHEPTXFNQNYSVIIMGVLTILAVQC 77
           CI+  AI++ +    FN+N++    G+L+     C
Sbjct: 622 CILSSAIIKMYLDFEFNENFNATTFGLLSSFTKHC 656


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 262 SSSTPIPNRSDDXKHLXSVDDHF*T 336
           SS+TP+PN+    + L S +D F T
Sbjct: 192 SSATPLPNQPSQQQFLVSKNDAFTT 216


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 127 NYSVIIMGVLTILAVQC 77
           NY+V+IMG ++I A+ C
Sbjct: 544 NYAVVIMGGVSIFAIIC 560


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 277  SVCWNSIVYLEIDYE 233
            S+CW  IVYL  D++
Sbjct: 1245 SICWEQIVYLVQDFQ 1259


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 165  ARHMMHFL*RFSYTQFWLKIS 227
            ARH++ FL   S  +FW+K S
Sbjct: 1913 ARHLLKFLLEDSKKRFWVKTS 1933


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 175 MCRAIVRDHEPTXFNQNYSVIIMGVLTILA 86
           M   +V+ H P    QNY + ++ V  ++A
Sbjct: 149 MILTLVQLHNPNFETQNYQIFLLAVAAMIA 178


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 127 NYSVIIMGVLTILAVQCWNLYV 62
           +++V +M  LT   + CW +Y+
Sbjct: 692 SHTVSLMKYLTSAVISCWRIYL 713


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 353 RVSNXRVQ-KWSSTDXRCXISSLRFGIGV 270
           +V   R+Q +W S   +  ++++ FG+GV
Sbjct: 779 KVERQRIQNEWQSGSYKIIVATIAFGMGV 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,391,507
Number of Sequences: 5004
Number of extensions: 25579
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)