Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k24
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930...    29   0.79 
01_06_1509 - 37855894-37856679,37856766-37856952,37857508-378575...    28   2.4  

>10_08_0459 +
           18092656-18092724,18092827-18092886,18092970-18093038,
           18093134-18093178,18093706-18094332,18094424-18094597,
           18094688-18094991,18095070-18095161,18095253-18095319,
           18095407-18095478,18095613-18095830,18095979-18096113,
           18096225-18096520,18096603-18096774,18096860-18096958,
           18097048-18097179,18097273-18097373,18097460-18097649,
           18097713-18097751
          Length = 986

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -2

Query: 280 ESVCWNSIVYLEID------YENAEILSQNCVXENLYKKCIMCRAIVRDHEPTXFNQNYS 119
           +S  W S   ++ID      Y     L +NC+    Y   + CR + +D  P+   +NY 
Sbjct: 737 DSSKWQSYYAVDIDNVKAKFYSFGHSLKKNCIVSP-YVISVFCRVLFQDSHPSKSKRNYF 795

Query: 118 VIIMG 104
            + +G
Sbjct: 796 FLSIG 800


>01_06_1509 -
           37855894-37856679,37856766-37856952,37857508-37857580,
           37857772-37857816,37858004-37858010
          Length = 365

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +1

Query: 166 LGT*CIFCKGSXIHSFGSRFRHFRSQFPNT-----R*SSSTPIPNRSDD 297
           L T C+FC+G   H+ G   +  R   P T       SSS PI N  DD
Sbjct: 34  LPTNCLFCRGVDSHAPGGLLKFLRKTTPRTEQHVCNGSSSQPI-NVGDD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,572,773
Number of Sequences: 37544
Number of extensions: 151116
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)