Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k24
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    28   2.2  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    27   2.8  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    27   2.8  
Z92780-8|CAI46553.1|  587|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z92780-7|CAI46552.1|  624|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z92780-6|CAI46551.1|  691|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z92780-5|CAI46550.1|  532|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z81068-16|CAJ30230.1|  587|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z81068-15|CAB02980.2|  624|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z81068-14|CAJ30229.1|  691|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z81068-13|CAJ30228.1|  532|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z81068-11|CAB02981.1|  454|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z81068-10|CAJ30226.1|  258|Caenorhabditis elegans Hypothetical p...    27   3.8  
EF443133-1|ABO31113.1|  656|Caenorhabditis elegans LIM-9 isoform...    27   3.8  
AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b prote...    26   8.7  

>U61953-6|AAO91706.1|  341|Caenorhabditis elegans Hypothetical
           protein R08C7.9 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 178 IMCRAIVRDHEPTXFNQNYSVIIMGVLTILAVQCWNL-YVQLKEMRRNIYIK 26
           I+C+ I   H P     N  V++ G+L   AV  WN+  + LK++  NI++K
Sbjct: 221 ILCQFIHSVHLPAKLFSNVRVLLDGLLIADAVLLWNMDKMCLKDV--NIFLK 270


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 192 RFSYTQFWLKISAFS*SISKYTIEFQHT 275
           RFSY++ WL IS F  +I  +   FQH+
Sbjct: 181 RFSYSRIWLHISIFDSNI-PFMAVFQHS 207


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 211 NCVXENLYKKCIMCRAIVRDHEPTXFNQNYSVIIMGVLTILAVQCWNLYVQ-LKEMRRNI 35
           +C+   ++  C+  R   R +  + F +N  VII GV+T ++ +  +LY++ +  + R I
Sbjct: 14  SCIVWTVFSSCLKPRP-TRSYIHSLF-ENSDVIIAGVITGISYRVDSLYIENITVIPRRI 71

Query: 34  Y 32
           Y
Sbjct: 72  Y 72


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 211 NCVXENLYKKCIMCRAIVRDHEPTXFNQNYSVIIMGVLTILAVQCWNLYVQ-LKEMRRNI 35
           +C+   ++  C+  R   R +  + F +N  VII GV+T ++ +  +LY++ +  + R I
Sbjct: 14  SCIVWTVFSSCLKPRP-TRSYIHSLF-ENSDVIIAGVITGISYRVDSLYIENITVIPRRI 71

Query: 34  Y 32
           Y
Sbjct: 72  Y 72


>Z92780-8|CAI46553.1|  587|Caenorhabditis elegans Hypothetical
           protein F25H5.1b protein.
          Length = 587

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 396 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 443


>Z92780-7|CAI46552.1|  624|Caenorhabditis elegans Hypothetical
           protein F25H5.1a protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 433 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 480


>Z92780-6|CAI46551.1|  691|Caenorhabditis elegans Hypothetical
           protein F25H5.1f protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 433 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 480


>Z92780-5|CAI46550.1|  532|Caenorhabditis elegans Hypothetical
           protein F25H5.1c protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 341 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 388


>Z81068-16|CAJ30230.1|  587|Caenorhabditis elegans Hypothetical
           protein F25H5.1b protein.
          Length = 587

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 396 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 443


>Z81068-15|CAB02980.2|  624|Caenorhabditis elegans Hypothetical
           protein F25H5.1a protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 433 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 480


>Z81068-14|CAJ30229.1|  691|Caenorhabditis elegans Hypothetical
           protein F25H5.1f protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 433 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 480


>Z81068-13|CAJ30228.1|  532|Caenorhabditis elegans Hypothetical
           protein F25H5.1c protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 341 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 388


>Z81068-11|CAB02981.1|  454|Caenorhabditis elegans Hypothetical
           protein F25H5.1e protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 263 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 310


>Z81068-10|CAJ30226.1|  258|Caenorhabditis elegans Hypothetical
           protein F25H5.1d protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 67  HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 114


>EF443133-1|ABO31113.1|  656|Caenorhabditis elegans LIM-9 isoform
           protein.
          Length = 656

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 298 YRHYDLESVCWNSIVYLEIDYENAEILSQNCVXENLYKKCIMCRAIVR 155
           + H  L S+C  S+V +    +N  I   NC  +    +C  C  I R
Sbjct: 433 HEHCFLCSMCKISLVDMPFGSKNDRIFCSNCYDQAFATRCDGCNEIFR 480


>AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b protein
           protein 52 protein.
          Length = 491

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 95  RKHAHYDYGIVLIKXGRLVIPYNRSAHDAFFVKVL 199
           R H H+D  +  ++ G + I  +    DA F+++L
Sbjct: 351 RSHKHFDLILNFMRDGHVAIANDHKEKDADFLQIL 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,785,541
Number of Sequences: 27780
Number of extensions: 148884
Number of successful extensions: 343
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)