Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k24
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   7.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 232 NAEILSQNCVXENLYKK 182
           +AE++++ C+ E LYK+
Sbjct: 318 HAEVVARRCLCEYLYKQ 334


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 248  GN*LRKCRNLEPKLCIXEPLQKMHHVPSDCKGSRADRV*SKLFRNHN 108
            G+ L   ++L+   CI +   +  +V SD +  R D   S    +HN
Sbjct: 1636 GDSLNVAKSLQDHDCIRQERTQQRNVISDSESGRLDTEMSTWGYHHN 1682


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 219 KISAFS*SISKYTIEFQHTDSK 284
           K +  S S+   T +FQHT S+
Sbjct: 209 KYATSSNSLRNRTHDFQHTSSR 230


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 219 KISAFS*SISKYTIEFQHTDSK 284
           K +  S S+   T +FQHT S+
Sbjct: 209 KYATSSNSLRSRTHDFQHTSSR 230


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 66  YKFQHCTASIVSTPIMITE 122
           YKF+H T   + T  +I E
Sbjct: 373 YKFRHITEITILTVQLIVE 391


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 203 IXEPLQKMHHVPS 165
           I +P + MHH P+
Sbjct: 788 IIDPAKAMHHYPT 800


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,047
Number of Sequences: 438
Number of extensions: 1841
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)