Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k16
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0146 - 953957-956278,956468-956786,957185-957213                 31   0.86 
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    29   4.6  
08_02_0017 - 11264038-11264260,11264376-11264653                       28   6.1  
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    28   8.0  
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222...    28   8.0  

>05_01_0146 - 953957-956278,956468-956786,957185-957213
          Length = 889

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/65 (26%), Positives = 38/65 (58%)
 Frame = +3

Query: 432 LNKAEECYVKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDV 611
           LN  +   VKI+ L +E++K I +  E  ++E++ +R   + TAA +  + +A+ + +  
Sbjct: 463 LNNEKAANVKIEGLTEENVKLISELNETRDREEKEKRAVEDLTAALSEESDKAKEAHERY 522

Query: 612 VNRAD 626
           +++ D
Sbjct: 523 LSKED 527


>02_05_0366 -
           28313190-28313601,28313759-28314225,28315044-28315782,
           28316548-28316615,28316693-28316757,28316922-28320162,
           28320239-28320301,28320756-28320824,28321020-28321055,
           28322035-28322280,28322531-28322569,28322695-28322816,
           28322921-28323004,28323100-28323235,28323486-28323535,
           28323620-28323756,28323863-28323951,28324847-28324954,
           28325080-28325163,28325841-28325888,28326036-28326153,
           28328262-28328347
          Length = 2168

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +3

Query: 456 VKIDRLFKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANI 635
           V+ID  +  S+ +   D E    E EA+   AE+    A L   A    DD++     N 
Sbjct: 226 VEIDDDYNSSLGEEPKDDEHTIDEDEAQITEAERNEELAALQAEADLPLDDILKLYTKNK 285

Query: 636 STAFS 650
             AFS
Sbjct: 286 VQAFS 290


>08_02_0017 - 11264038-11264260,11264376-11264653
          Length = 166

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 187 RRGYRPATWPHRALKIIANWW 249
           RR  + ATWP R+ + +A WW
Sbjct: 20  RRRAQGATWPKRSKEQMARWW 40


>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 90  VDVIVDDKTLSLEEKIDTLTSM-VLAVNGLPQ-SPPRVSSSDLAASSIKNNSKLVGNDFE 263
           VD +V+      E    TL ++    VNG  + SP R  S D A  S+K N+ L+  D+ 
Sbjct: 509 VDYLVEASAAEAEAISATLAAVKARQVNGEAEHSPDREQSPD-ATPSVKQNASLIKPDYA 567

Query: 264 MRYN 275
           +  N
Sbjct: 568 LSNN 571


>07_03_0337 +
           16918613-16919078,16921610-16921725,16922039-16922208,
           16922509-16922602,16923371-16923457,16923529-16923609,
           16923800-16923925,16924541-16924649,16924723-16924802,
           16925401-16925529,16925605-16925705,16926075-16926208,
           16926307-16926404,16926488-16926607,16927008-16927022,
           16927930-16927957,16928066-16928118,16928446-16928517,
           16928605-16928652,16928928-16929033,16929110-16929168,
           16929792-16929887,16929942-16929959
          Length = 801

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
 Frame = +3

Query: 423 DSLLNKAEECYVKIDRLFK----------ESIKKIMDDTEA--FEKEQEAERLRAEQTAA 566
           D  L + +E YV++D  F+          + I+K  DD EA   E  Q+AE+  + Q+AA
Sbjct: 161 DKELKERDEKYVELDTKFQRLHKRAKQRIQDIQKEKDDMEARFNEINQKAEQASSLQSAA 220

Query: 567 NALLNRRAQTSADDVVNRADA 629
              L  RA+  A + +   DA
Sbjct: 221 QQEL-ERARQQASEALRSMDA 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,756
Number of Sequences: 37544
Number of extensions: 352448
Number of successful extensions: 1026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)