Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k16
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    25   0.51 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.51 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.51 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.4  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 369 TDYFLFRQLNRRSSRCNTWDN 307
           TD  +FRQ    +++ N+WDN
Sbjct: 138 TDEVVFRQTKAIANKINSWDN 158


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 66  ILSRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAVNGLPQ 182
           +L++     DV+ D K      K++T+    +AV+GLP+
Sbjct: 439 MLNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPE 477


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 66  ILSRNIQTVDVIVDDKTLSLEEKIDTLTSMVLAVNGLPQ 182
           +L++     DV+ D K      K++T+    +AV+GLP+
Sbjct: 439 MLNQLYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPE 477


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 189 PRVSSSDLAASSIKNNSKLVGNDFEMRYN 275
           P++ SS L+  +I NN+    N++   YN
Sbjct: 312 PKIISS-LSNKTIHNNNNYNNNNYNNNYN 339


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 527 TGSGKIEGRTNCRKRSSEQASADV 598
           TG+ K  G    R+RSS+   A+V
Sbjct: 367 TGASKSHGDLELRQRSSKSLLANV 390


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 307 RLTKTTAIRNTL 272
           RL KTTAI+N L
Sbjct: 68  RLLKTTAIKNVL 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,892
Number of Sequences: 438
Number of extensions: 3824
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)