Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11k08
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 242 3e-65
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.10
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 28 1.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 3.9
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 3.9
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 5.1
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 5.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.8
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 6.8
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 6.8
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.0
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 25 9.0
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 25 9.0
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 242 bits (592), Expect = 3e-65
Identities = 108/160 (67%), Positives = 135/160 (84%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 326
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 327 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 506
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 507 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
MFGYATDET E +PLT++LAHKLN ++ RR+G W R
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLR 164
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.10
Identities = 40/144 (27%), Positives = 65/144 (45%)
Frame = -2
Query: 562 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 383
S++ + SVSS + +P TSSS+L S + + SS+S TL S L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235
Query: 382 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 203
SS P + S +T S + S S+ ++S ++ +S S +S I+S
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292
Query: 202 WSHILSG*PSPTDSDVNKNTDPSS 131
S S P+ T S ++ ++ SS
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.3
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +3
Query: 51 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 227
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692
Query: 228 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 326
K E L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 197 RPNKRRYSRRAPESGSGRKSCM 262
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 183 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 287
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 419 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 294
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 315 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 434
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 203 LVAHFVWMTLANRFRCEQKY*SIFHII 123
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 610 SPFRLSSAIF*LSLCASTTVN--GMHSSVSSVA*PNIKPWSPAPTSSSFLFS 461
+P+ + +F +S+ S+T G+ S+ + + P SP+ + S+FLF+
Sbjct: 206 NPWAAGTQLFLVSVLQSSTGERVGLSGSIDMLKDEYLSPQSPSFSKSNFLFA 257
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 450 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 331
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 364 ICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRC 227
I L++ TF + LD++ HK+ P +V A F GS F C
Sbjct: 351 IRLSLEEATFNQIIMELDIL--HKAVSPYIVDFYGAFFVEGSVFIC 394
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 613 NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 521
N+PF +S +++ S +T ++G+H V ++
Sbjct: 195 NAPFTISDSVYGASFYFATGLHGIHIIVGTI 225
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 WKMDQYFCSHRNLLARVIQTKC 195
W + + F S+R L A I+T C
Sbjct: 27 WNISKTFLSYRTLTALAIETSC 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,233
Number of Sequences: 5004
Number of extensions: 62252
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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