Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11k08
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical pr... 274 3e-74
U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical pr... 274 3e-74
U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily ass... 271 3e-73
Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical pr... 263 6e-71
U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical pr... 185 3e-47
U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily as... 182 2e-46
U41009-5|AAO44915.1| 173|Caenorhabditis elegans Hypothetical pr... 149 2e-36
AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical... 137 7e-33
AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical... 133 9e-32
U41009-7|AAN84884.1| 51|Caenorhabditis elegans Hypothetical pr... 80 1e-15
U41009-6|AAK68167.2| 84|Caenorhabditis elegans Hypothetical pr... 44 7e-05
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 32 0.29
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 32 0.29
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 2.1
U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical... 28 4.8
U28991-14|AAA68388.1| 352|Caenorhabditis elegans Hypothetical p... 28 6.3
U28991-13|AAA68387.1| 281|Caenorhabditis elegans Hypothetical p... 28 6.3
AF016681-20|AAB66167.1| 370|Caenorhabditis elegans Hypothetical... 27 8.3
AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical ... 27 8.3
>U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.1a protein.
Length = 404
Score = 274 bits (672), Expect = 3e-74
Identities = 122/160 (76%), Positives = 144/160 (90%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 326
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 327 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 506
DYQ +VR +K IGYDDSSKGFDYKTC+V++AL+QQSP IAAGVH +++ ++VGAGDQG+
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGI 125
Query: 507 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
MFGYATDETEE MPLT++L+HKLN+K+ ELRR+GE W R
Sbjct: 126 MFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVR 165
>U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.3a protein.
Length = 404
Score = 274 bits (672), Expect = 3e-74
Identities = 122/160 (76%), Positives = 144/160 (90%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 326
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 327 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 506
DYQ +VR +K IGYDDSSKGFDYKTC+V++AL+QQSP IAAGVH +++ ++VGAGDQG+
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGI 125
Query: 507 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
MFGYATDETEE MPLT++L+HKLN+K+ ELRR+GE W R
Sbjct: 126 MFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVR 165
>U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform a protein.
Length = 404
Score = 271 bits (664), Expect = 3e-73
Identities = 122/160 (76%), Positives = 142/160 (88%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 326
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 327 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 506
DYQ +VR +K IGYDDSSKGFDYKTC+V++AL+QQSP IAAGVH +++ +VGAGDQG+
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDIADVGAGDQGI 125
Query: 507 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
MFGYATDETEE MPLT++L+HKLN K+ ELRR+GE W R
Sbjct: 126 MFGYATDETEEAMPLTLLLSHKLNYKLHELRRSGELEWVR 165
>Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical
protein C49F5.1 protein.
Length = 403
Score = 263 bits (645), Expect = 6e-71
Identities = 118/162 (72%), Positives = 142/162 (87%)
Frame = +3
Query: 141 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 320
S FLFTSESV EGHPDKMCDQISDA+LDAHL QDP+AKVACET+TKTGMV+LCGEITSKA
Sbjct: 3 SKFLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKA 62
Query: 321 NVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQ 500
VDYQ +VR ++ IG+ DSS GFD+KTC+V++AL+QQSP IAAGVH N++ E+VGAGDQ
Sbjct: 63 VVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGVHVNKDGEDVGAGDQ 122
Query: 501 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
G+MFGYATDETEE MPLT++L+HK+N ++ +LRRNG W R
Sbjct: 123 GIMFGYATDETEETMPLTLILSHKINAELHKLRRNGTLPWVR 164
>U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical
protein C06E7.3b protein.
Length = 353
Score = 185 bits (450), Expect = 3e-47
Identities = 81/114 (71%), Positives = 101/114 (88%)
Frame = +3
Query: 285 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 464
M++LCGEITSKA VDYQ +VR +K IGYDDSSKGFDYKTC+V++AL+QQSP IAAGVH
Sbjct: 1 MIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHV 60
Query: 465 NRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
+++ ++VGAGDQG+MFGYATDETEE MPLT++L+HKLN+K+ ELRR+GE W R
Sbjct: 61 DKDSDDVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVR 114
>U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform b protein.
Length = 353
Score = 182 bits (442), Expect = 2e-46
Identities = 81/114 (71%), Positives = 99/114 (86%)
Frame = +3
Query: 285 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHE 464
M++LCGEITSKA VDYQ +VR +K IGYDDSSKGFDYKTC+V++AL+QQSP IAAGVH
Sbjct: 1 MIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHV 60
Query: 465 NRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
+++ +VGAGDQG+MFGYATDETEE MPLT++L+HKLN K+ ELRR+GE W R
Sbjct: 61 DKDIADVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNYKLHELRRSGELEWVR 114
>U41009-5|AAO44915.1| 173|Caenorhabditis elegans Hypothetical
protein C06E7.1d protein.
Length = 173
Score = 149 bits (360), Expect = 2e-36
Identities = 67/81 (82%), Positives = 73/81 (90%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 326
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 327 DYQKVVRETVKHIGYDDSSKG 389
DYQ +VR +K IGYDDSSKG
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKG 86
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 325 WIIKKLCAKRSNILVMMIRPKAL----ITRHAV*CSH*TNNHQTLLLGCMRTEMTRKLGQ 492
W+I LC + S+ L ++I+ ITRHA+ H NNH LL T +
Sbjct: 97 WLIT-LC-QESHFLGLLIKYSIQFQDSITRHAMFLLHSNNNHLKSLLESTWTRIVTMSEP 154
Query: 493 ETRA*CSVMQQMRQKNAC 546
E + C M M+ K C
Sbjct: 155 EIKELCLDMLLMKPKKRC 172
>AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical
protein Y105C5B.12a protein.
Length = 345
Score = 137 bits (331), Expect = 7e-33
Identities = 59/87 (67%), Positives = 75/87 (86%)
Frame = +3
Query: 366 GYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECM 545
GY D GFDYKTC+V++AL+QQSP IAAGVH +++ ++VGAGDQG+MFGYATDETEE M
Sbjct: 20 GYFDYRNGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGIMFGYATDETEEAM 79
Query: 546 PLTVVLAHKLNQKIAELRRNGEFWWAR 626
PLT++L+HKLN+K+ ELRR+GE W R
Sbjct: 80 PLTLLLSHKLNRKLHELRRSGELEWVR 106
>AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical
protein Y105C5B.12b protein.
Length = 363
Score = 133 bits (322), Expect = 9e-32
Identities = 59/92 (64%), Positives = 77/92 (83%), Gaps = 3/92 (3%)
Frame = +3
Query: 360 HIGYDDSSK---GFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDE 530
H+ D +K GFDYKTC+V++AL+QQSP IAAGVH +++ ++VGAGDQG+MFGYATDE
Sbjct: 33 HLAQDPHAKVACGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGIMFGYATDE 92
Query: 531 TEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 626
TEE MPLT++L+HKLN+K+ ELRR+GE W R
Sbjct: 93 TEEAMPLTLLLSHKLNRKLHELRRSGELEWVR 124
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/86 (54%), Positives = 53/86 (61%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 326
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVAC KT VL+ E S
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACGFDYKTCNVLVALEQQSPEIA 65
Query: 327 DYQKVVRETVKHIGYDDSSKGFDYKT 404
V +++ +G D F Y T
Sbjct: 66 AGVHVDKDS-DDVGAGDQGIMFGYAT 90
>U41009-7|AAN84884.1| 51|Caenorhabditis elegans Hypothetical
protein C06E7.1c protein.
Length = 51
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 263
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVAC
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVAC 44
>U41009-6|AAK68167.2| 84|Caenorhabditis elegans Hypothetical
protein C06E7.1b protein.
Length = 84
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +3
Query: 147 FLFTSESVGEGHPDKMCDQ 203
FLFTSESV EGHPDKMCDQ
Sbjct: 6 FLFTSESVSEGHPDKMCDQ 24
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 AILDAHLNQDPDAKVACETITKTGM-VLLCGEITSKANVDYQKVVRET 353
A +D ++ Q P+ +C + G VL+ E +KAN+DY ++ +ET
Sbjct: 290 ACIDENMEQPPEGDWSCPHCEEHGPDVLIVEEEPAKANMDYCRICKET 337
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 AILDAHLNQDPDAKVACETITKTGM-VLLCGEITSKANVDYQKVVRET 353
A +D ++ Q P+ +C + G VL+ E +KAN+DY ++ +ET
Sbjct: 290 ACIDENMEQPPEGDWSCPHCEEHGPDVLIVEEEPAKANMDYCRICKET 337
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 AILDAHLNQDPDAKVACETITKTGM-VLLCGEITSKANVDYQKVVRET 353
A +D ++ Q P+ +C + G VL+ E +KAN+DY ++ +ET
Sbjct: 290 ACIDENMEQPPEGDWSCPHCEEHGPDVLIVEEEPAKANMDYCRICKET 337
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 369 YDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDE-TEECM 545
+DD+S+ + T + DQQ N + ++GA GL +++ T++
Sbjct: 225 HDDNSQPIEILTRILSKTSDQQWENFIGLLETIEKSTDIGASISGLRVSCSSNVLTKDSE 284
Query: 546 PLTVVLAHKLNQKIAELRRN 605
T V+ KLN++ E RN
Sbjct: 285 TQTDVVQRKLNKERREPSRN 304
>U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical
protein M03A1.3 protein.
Length = 669
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 267 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 446
T+T+TG L + + ++++ K + D ++K D KTC L +DQ N+
Sbjct: 37 TLTRTGDSLNLRIYDENSAIRKVHILQKEGKDVLVDCTNKKEDGKTCEAQLTVDQFEKNL 96
Query: 447 AAGV 458
+
Sbjct: 97 PISI 100
>AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical
protein Y59A8B.13 protein.
Length = 417
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 313 PKLTWIIKKLCAKRSNIL---VMMIRPKALITRH 405
PK+ W ++K+C K+ +I + I P+ L+T H
Sbjct: 253 PKIVWHLEKMCNKKEDISRGNPVSIPPQRLLTHH 286
>U28991-14|AAA68388.1| 352|Caenorhabditis elegans Hypothetical
protein F08F8.1 protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -1
Query: 386 FGRIIITNMFDRFAHNFLIIHVSFGCDFATQKHHTGFSYGF 264
FGR D NF H FG HH GF +GF
Sbjct: 149 FGRPFGRRGMDHHGFNFHRHHHPFGAFHGFGGHHHGFGHGF 189
>U28991-13|AAA68387.1| 281|Caenorhabditis elegans Hypothetical
protein F08F8.5 protein.
Length = 281
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -1
Query: 386 FGRIIITNMFDRFAHNFLIIHVSFGCDFATQKHHTGFSYGF 264
FGR D NF H FG HH GF +GF
Sbjct: 223 FGRPFGRRGMDHHGFNFHRHHHPFGAFHGFGGHHHGFGHGF 263
>AF016681-20|AAB66167.1| 370|Caenorhabditis elegans Hypothetical
protein F22E5.1 protein.
Length = 370
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 277 KPVWCFCVAKSHPKLTWIIKKLCAKRSNILVMMIRPKALITR 402
KP+ + K HP + W+ L K+ N++ +M++ A T+
Sbjct: 197 KPLLLAELLKEHPNIWWMDAHLSVKKPNMVELMMKEVAEKTK 238
>AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical
protein T28F2.2 protein.
Length = 175
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 322 TWIIKKLCAKRSNILVMMIRPKALITRHAV*CSH 423
+W+++++C SN+ V+ + H V C H
Sbjct: 5 SWLLEEICTNFSNLTVLKFKELCNRASHLVLCGH 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,222,722
Number of Sequences: 27780
Number of extensions: 370278
Number of successful extensions: 1036
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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