Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11k06
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 31 0.16
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 28 0.84
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.6
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 3.4
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 26 3.4
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 4.5
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 4.5
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 25 6.0
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 6.0
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 107 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGL-VQANTMLNEARR 256
G++ KK+ E+ EK+ H + ++ A AGL AN ++N ARR
Sbjct: 42 GIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARR 92
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 28.3 bits (60), Expect = 0.84
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 399 LRFCARRNAYFSPPNAHTANECSSWGLLGLAI 304
LR C N+ F PN+HT N S + + L I
Sbjct: 906 LRICTIPNSIFDSPNSHTTNSNSFFTKVSLDI 937
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 2.6
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +2
Query: 113 IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNE----ARRETAQLANR 280
IEE K+ FAS S E ++ +ALV+ A L ++ + E + R+ L +
Sbjct: 173 IEERKKQHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKK 232
Query: 281 MADIAQ 298
+A +AQ
Sbjct: 233 LAGLAQ 238
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 89 KMDTNYGVIEELNKKLAFASESLAEANEKI 178
K++ + +++L KKLA ++ E NEKI
Sbjct: 218 KLEVSSRQVQDLEKKLAGLAQQNTELNEKI 247
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 281 MADIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRSIKRLGSSDV 439
+AD + +A + P LH+L + A E + RA L+RS+ + SD+
Sbjct: 449 LADKLRTQVALSDKPVNLHTLYIKASSSEMRSRKRAMDLQLSRSVVIIRISDL 501
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 3.4
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 113 IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 286
IEE KKL +E L++ N + L T N LV+ LN E QL ++A
Sbjct: 90 IEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKT---LNSLNSEFLQLLRKIA 144
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 398 SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRKPVQSQAQQD 538
S N+SIK + SSD+ F SD + + + V P P ++ D
Sbjct: 604 SYNKSIKDMSSSDMAF-SDPAYSGTTLRSSVDLNTPEYPFSNRNDSD 649
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 188 ANALVTANAGLVQANTMLNEARRETAQLA--NRMADIAQDVIAKPN 319
A+A V + A + ++ +N R + A A NRMAD+ + + K N
Sbjct: 304 ASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKAN 349
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 311 WLSRLAQCPPCGWPAAPFRGAPRL 240
W+SR CP CG P G +L
Sbjct: 175 WISRYRFCPGCGKRNIPTMGGTKL 198
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 380 LRAQKRSLNRSIKRLGSSDVVFSSDYVPNA 469
+ A+ + + + LG++ VFS DY+ NA
Sbjct: 77 INAEANVITKQLYLLGTNTSVFSEDYLSNA 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,156
Number of Sequences: 5004
Number of extensions: 40955
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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