Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11k06
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575... 31 0.49
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 31 0.86
02_01_0642 - 4803464-4805665,4806231-4806320 30 1.1
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 6.1
12_01_0429 - 3390096-3390209,3390305-3390547 27 8.0
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 27 8.0
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 27 8.0
02_04_0310 - 21932418-21932531,21932627-21932869 27 8.0
01_05_0418 + 21964094-21964482,21964558-21964681 27 8.0
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 27 8.0
>01_07_0201 +
41956938-41957022,41957123-41957214,41957460-41957561,
41957691-41957763,41958297-41958403,41958476-41958599,
41959004-41959198,41959515-41959600,41959695-41959802,
41960171-41960266,41960347-41960445,41960562-41960636,
41961040-41961171,41961252-41961367,41961935-41962109
Length = 554
Score = 31.5 bits (68), Expect = 0.49
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 2/146 (1%)
Frame = +2
Query: 86 VKMDTNYGVIEELNKK-LAFASESLAE-ANEKIIHFANALVTANAGLVQANTMLNEARRE 259
V MD EL+K L A ++ + AN+ ++ +V N G+ + A+
Sbjct: 338 VDMDYLLNTTLELDKSGLQIAIHAIGDKANDMLLDMYEKVVDLN-GMKDHRFRIEHAQHL 396
Query: 260 TAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRSIKRLGSSDV 439
A R +P+ H L G+K RA++ S + G + +
Sbjct: 397 APGAAKRFGKHGIIASVQPD-----HILDDANSAGKKIGIERAERSSYSFRSLLDGGAHL 451
Query: 440 VFSSDYVPNAMNVLNKVKETLPRKPV 517
F SD+ + +N L ++ + RKPV
Sbjct: 452 AFGSDWPVSDINPLQAIRTAVSRKPV 477
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 30.7 bits (66), Expect = 0.86
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = +2
Query: 107 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 286
G+I L K + L + E F N+L N + +E R+ET QLA
Sbjct: 74 GIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKT----QNNLRDELRKETVQLARENL 129
Query: 287 DIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRS 412
+ Q ++ N ++ + + A ++ A L QK + RS
Sbjct: 130 EKEQRILELRNQCTIIRTTELAA-AQDRLAELERQKDEIMRS 170
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 89 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 268
K+++ ++E + +L+ LAE N +++ L + LVQ T L + +
Sbjct: 475 KVESIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQT 534
Query: 269 LANRM 283
L N++
Sbjct: 535 LQNKL 539
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.9 bits (59), Expect = 6.1
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 5/147 (3%)
Frame = +2
Query: 119 ELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQ 298
EL L F E+ E E+ H + + L L + E +NR AD+
Sbjct: 502 ELTATLTFEKEARKEVEEQREHLCSENKRVLSNLSDLELSLASLKEEMNDGSNRCADLEC 561
Query: 299 DV-IAKPNNPQLLHSLAVCALGGEKY----AFLRAQKRSLNRSIKRLGSSDVVFSSDYVP 463
++ K N + L LA C E L A +IK+L ++ S++
Sbjct: 562 ELRSTKENMERTLVELASCRNSLETLQNDNLELSANSSFEKEAIKKLEEDNLCLSNEKQG 621
Query: 464 NAMNVLNKVKETLPRKPVQSQAQQDHA 544
++ L++ KE L + + + HA
Sbjct: 622 LLLD-LSETKEELHLSYAKHEHLESHA 647
>12_01_0429 - 3390096-3390209,3390305-3390547
Length = 118
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 241 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 336
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 241 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 336
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = -1
Query: 381 RNAYFSPPNAHTANECSSWGLLGL--AITSC--AMSAMRLAS 268
R Y +PP++ T+ CS G+LG+ + C A+ A+++A+
Sbjct: 213 RCLYPNPPSSPTSQSCSDNGILGILPGVIGCLQALEAIKVAT 254
>02_04_0310 - 21932418-21932531,21932627-21932869
Length = 118
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 241 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 336
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>01_05_0418 + 21964094-21964482,21964558-21964681
Length = 170
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -2
Query: 278 GWPAAPFRGAPRLTLC*LAPIRRWRSP 198
GW A FRG PR LC R WR P
Sbjct: 111 GWMA--FRGWPRARLCRWLQSRCWRKP 135
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 241 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 336
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 241 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 336
+ GA R G AAGQ H G +S T PT T
Sbjct: 188 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,374
Number of Sequences: 37544
Number of extensions: 311508
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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