Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11k06
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.3
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 29 3.1
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 29 3.1
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 29 3.1
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 4.1
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 4.1
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 4.1
Z83218-1|CAB05686.1| 282|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 27 9.5
U58746-7|AAB00628.2| 461|Caenorhabditis elegans Hypothetical pr... 27 9.5
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 27 9.5
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 27 9.5
AC084154-5|AAO91683.1| 335|Caenorhabditis elegans Hypothetical ... 27 9.5
>U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical
protein F41H10.4 protein.
Length = 575
Score = 30.7 bits (66), Expect = 0.77
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
Frame = +2
Query: 101 NYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARR--ETAQLA 274
NY + EE+ KK A AS+ + + FA+ L+ + + + RR ET +
Sbjct: 27 NYELREEIKKKNAAASQHQNSPKNEALQFASKLINRASSSKKDEAEIESLRRKLETQEQE 86
Query: 275 NRM--ADIAQDV-IAKPNNPQLLHSLAVCALGG-EKYAFLRAQKRSLNRSIKRLGSSDVV 442
R+ + + +++ N L + ++ + EK A R L +IK L V+
Sbjct: 87 FRLQQSTLFEELKTISTQNETLKNQMSSYSDHPLEKEAEERQTVEQLKEAIKNLTDEKVL 146
Query: 443 FSSDYVPNAMNVLNKVKETL 502
+ +P N + + E L
Sbjct: 147 LCQETIPAISNKVTSLSEEL 166
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Frame = -1
Query: 537 SCCAWLCTGF-RGSVSLTLLSTFMALGT*SLLNTTSDEPKRLMLRLRLRFCARRNAYFSP 361
+C +W GF S T + T T SL +++SD + A S
Sbjct: 137 TCTSWAANGFCTSSFYTTAIKTQYCAATCSLCSSSSDSSS-----------SSSTASTSS 185
Query: 360 PNAHTANECSSWGLLGLAITSCAMSAMRLASCA 262
+A+ CSSW G S A R CA
Sbjct: 186 SCTDSASSCSSWAANGFCTNSFYTDAQRELYCA 218
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +2
Query: 200 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 379
+TA A M +A +E A M+ ++ + + NP + + CA+ GE +A
Sbjct: 7 ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64
Query: 380 LRAQKRSLNRSIKRL 424
+ + R I L
Sbjct: 65 VASDTRMTQNDINIL 79
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +2
Query: 200 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 379
+TA A M +A +E A M+ ++ + + NP + + CA+ GE +A
Sbjct: 7 ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64
Query: 380 LRAQKRSLNRSIKRL 424
+ + R I L
Sbjct: 65 VASDTRMTQNDINIL 79
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 154 TFASKRQLFI*LFNHTIICVHLDGRRVLARAQHLRNHLLQQPRL 23
TF + R FN+ ++C D R V A LR HL QQ L
Sbjct: 101 TFVAHRYKCHGSFNNNVMCPLGDCREVFASLYTLRRHLSQQHEL 144
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +2
Query: 32 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 208
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 209 ------NAGLVQANTMLNEARRETAQLANRMAD 289
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +2
Query: 32 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 208
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 209 ------NAGLVQANTMLNEARRETAQLANRMAD 289
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +2
Query: 32 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 208
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 209 ------NAGLVQANTMLNEARRETAQLANRMAD 289
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>Z83218-1|CAB05686.1| 282|Caenorhabditis elegans Hypothetical
protein C31A11.4 protein.
Length = 282
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 529 CLALYWFSRQRFFNFVKHVHGVGHIVAAKYHVGRTQAFNATVKTALLRAQKRILFSA 359
C A YW S +R F+F +V+ + + F+ V + RA + LF +
Sbjct: 166 CYATYWLSHERIFSFSNVFFSA--VVSFRLFIW-NHFFSTQVSNTISRATRNALFDS 219
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
protein C10C6.1 protein.
Length = 1565
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 386 AQKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRKPVQSQAQQDHAVAK 553
AQ LNR R +S + F ++Y +N + KE PR +Q + + + VA+
Sbjct: 262 AQNAFLNRPRSRSLTSPMKFLNEYNIEMVNRTSVYKERFPRAKLQMEERLNAFVAE 317
>U58746-7|AAB00628.2| 461|Caenorhabditis elegans Hypothetical
protein R05G6.10 protein.
Length = 461
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 266 QLANRMADIAQ---DVIAKPNNPQLLHSLAVCALGGEKYAFL 382
QLA ++ D+ Q V NPQ+L L + ++ GEK + L
Sbjct: 396 QLAEQLRDVIQWKSTVCTFEKNPQVLQYLLITSVSGEKDSML 437
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 383 RAQKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNKV--KETLPRKPV 517
RAQK +L+R +K S SS PNA V + + P+ P+
Sbjct: 174 RAQKEALSRGLKPSYQSSTGISSSSTPNAAAVSEPAAPRPSAPKGPI 220
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 386 AQKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRKPVQSQAQQDHAVAK 553
AQ LNR R +S + F ++Y +N + KE PR +Q + + + VA+
Sbjct: 262 AQNAFLNRPRSRSLTSPMKFLNEYNIEMVNRTSVYKERFPRAKLQMEERLNAFVAE 317
>AC084154-5|AAO91683.1| 335|Caenorhabditis elegans Hypothetical
protein Y22D7AR.14 protein.
Length = 335
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 38 EEVIPQVLCTGKYAPA----VKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVT 205
+++I +++ G AP+ +KMD+ VIE++NK + ++A+ K++ A
Sbjct: 78 DQLISELVNFGDIAPSQILDIKMDSLTNVIEKINKIQKASDFTMADRLLKLVSVAEKAEW 137
Query: 206 ANAGL 220
NA L
Sbjct: 138 LNATL 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,033
Number of Sequences: 27780
Number of extensions: 247043
Number of successful extensions: 770
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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